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Locus name | AT1G30810 |
Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Transcription regulation(JUMONJI) | Effect for Senescence | unclear | Gene Description | transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-WollastonHigh-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.Plant Cell 2011 Mar;23(3):873-94 | Gene Ontology | | Sequence | AT1G30810.1 | Genomic | mRNA | CDS | Protein AT1G30810.2 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
| Details | | target: AT1G30810.1 miRNA: ath-miR414 miRNA: ath-miR414 mfe: -34.5 kcal/mol p-value: 0.000627
position: 3874 target 5' G A G 3' UGACGGUGGUGAUGAGGA GA ACUGCUACUACUACUUCU CU miRNA 3' A 5'
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Ortholog Group | |
| Ortholog Groups: OG5_127370 | |
Cross Link | |
| Database | Entry ID | E-value | Start | End | InterPro ID | Description | PANTHER | PTHR10694 | 3.8E-264 | 7 | 753 | No hit | NA | SMART | SM00545 | 8.6E-22 | 58 | 99 | IPR003349 | Transcription factor jumonji, JmjN | ProSiteProfiles | PS51183 | 18.7 | 59 | 100 | IPR003349 | Transcription factor jumonji, JmjN | Pfam | PF02375 | 1.3E-15 | 60 | 93 | IPR003349 | Transcription factor jumonji, JmjN | SUPERFAMILY | SSF51197 | 9.1E-38 | 177 | 194 | No hit | NA | SUPERFAMILY | SSF51197 | 9.1E-38 | 228 | 454 | No hit | NA | ProSiteProfiles | PS51184 | 40.0 | 261 | 427 | IPR003347 | JmjC domain | SMART | SM00558 | 2.4E-69 | 261 | 427 | IPR003347 | JmjC domain | Pfam | PF02373 | 2.8E-45 | 294 | 410 | IPR003347 | JmjC domain | Pfam | PF02928 | 1.4E-16 | 519 | 572 | IPR004198 | Zinc finger, C5HC2-type | ProSiteProfiles | PS51542 | 22.9 | 644 | 702 | IPR003888 | FY-rich, N-terminal | Pfam | PF05964 | 2.8E-7 | 656 | 701 | IPR003888 | FY-rich, N-terminal | SMART | SM00541 | 1.3E-17 | 658 | 702 | IPR003888 | FY-rich, N-terminal | ProSiteProfiles | PS51543 | 24.6 | 704 | 788 | IPR003889 | FY-rich, C-terminal | Pfam | PF05965 | 6.8E-26 | 705 | 790 | IPR003889 | FY-rich, C-terminal | SMART | SM00542 | 1.2E-39 | 708 | 794 | IPR003889 | FY-rich, C-terminal |
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