Leaf Senescence DataBase

Basic information

Locus name

AT1G34370

Alias

STOP1

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Transcription regulation(C2H2)

Effect for Senescence

unclear

Gene Description

sensitive to proton rhizotoxicity 1 (STOP1); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to aluminum ion, response to acidity, regulation of transcription

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

molecular function

zinc ion binding

Sequence

miRNA Interaction

Details

target: AT1G34370.1
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -35.7 kcal/mol
p-value: 0.002045

position: 32
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

target: AT1G34370.1
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -35.7 kcal/mol
p-value: 0.001245

position: 32
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

target: AT1G34370.1
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -35.7 kcal/mol
p-value: 0.001055

position: 32
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

target: AT1G34370.1
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -35.7 kcal/mol
p-value: 0.001854

position: 32
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

target: AT1G34370.1
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -35.7 kcal/mol
p-value: 0.000726

position: 32
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

target: AT1G34370.2
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -35.7 kcal/mol
p-value: 0.002058

position: 38
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

target: AT1G34370.2
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -35.7 kcal/mol
p-value: 0.001254

position: 38
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

target: AT1G34370.2
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -35.7 kcal/mol
p-value: 0.001063

position: 38
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

target: AT1G34370.2
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -35.7 kcal/mol
p-value: 0.001867

position: 38
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

target: AT1G34370.2
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -35.7 kcal/mol
p-value: 0.000732

position: 38
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

target: AT1G34370.3
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -35.7 kcal/mol
p-value: 0.002008

position: 29
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

target: AT1G34370.3
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -35.7 kcal/mol
p-value: 0.001219

position: 29
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

target: AT1G34370.3
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -35.7 kcal/mol
p-value: 0.001032

position: 29
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

target: AT1G34370.3
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -35.7 kcal/mol
p-value: 0.001819

position: 29
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

target: AT1G34370.3
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -35.7 kcal/mol
p-value: 0.000710

position: 29
target 5' C      U         A     A  3'
           CUCCUC CUCUCUAUC UCAUC
           GAGGAG GAGGGAUAG AGUAG
miRNA  3'                  G        5'

Ortholog Group

Ortholog Groups: OG5_150200

Accession	Taxon
NP_001031140	Arabidopsis thaliana
NP_174697 ( AT1G34370 )	Arabidopsis thaliana
NP_849746	Arabidopsis thaliana
NP_001044935	Oryza sativa Japonica Group
NP_001047198	Oryza sativa Japonica Group
gw1.13.180.1	Physcomitrella patens subsp. patens
gw1.159.41.1	Physcomitrella patens subsp. patens
gw1.37.119.1	Physcomitrella patens subsp. patens
28161.m000228	Ricinus communis
29728.m000841	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR11389	5.5E-74	76	389	No hit	NA
SUPERFAMILY	SSF57667	2.2E-5	242	270	No hit	NA
ProSiteProfiles	PS50157	12.0	244	271	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0	244	266	IPR015880	Zinc finger, C2H2-like
Pfam	PF00096	1.2E-4	245	266	IPR007087	Zinc finger, C2H2
ProSitePatterns	PS00028	NA	246	266	IPR007087	Zinc finger, C2H2
SMART	SM00355	67.0	295	328	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	45.0	333	355	IPR015880	Zinc finger, C2H2-like

Subcellular Localization

Localization

nucleus

Evidence

SUBAcon

Pubmed ID

23180787