Basic information
Locus name	AT5G57390
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:AP2-EREBP
Effect for Senescence	Unclear
Gene Description	Upregulated in senescent leaves
Evidence	Molecular evidence:Real-Time PCR [Ref 1]
References	1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber B Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity
Sequence	AT5G57390.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G57390.1  miRNA: ath-miR391 miRNA: ath-miR391 mfe: -28.7 kcal/mol  p-value: 0.018396  position:  391  target 5' C        C       C   C 3'             GGCGUUGU UUCUCUU CGA              CCGCGAUA GAGAGGA GCU   miRNA  3' A                C   U 5'  target: AT5G57390.1  miRNA: ath-miR869 miRNA: ath-miR869 mfe: -24.9 kcal/mol  p-value: 0.036629  position:  1087  target 5' A    C A             U 3'             GUCA C AUUUCGACAUCAG              CAGU G UAGAGUUGUGGUC   miRNA  3'      U A             U 5'
Ortholog Group
Ortholog Groups: OG5_135471	Accession Taxon NP_175530 Arabidopsis thaliana NP_177401 Arabidopsis thaliana NP_188720 Arabidopsis thaliana NP_195489 Arabidopsis thaliana NP_197245 Arabidopsis thaliana NP_200549 ( AT5G57390 ) Arabidopsis thaliana ACO62577 Micromonas sp. RCC299 NP_001045103 Oryza sativa Japonica Group NP_001049466 Oryza sativa Japonica Group NP_001049927 Oryza sativa Japonica Group NP_001054108 Oryza sativa Japonica Group NP_001058256 Oryza sativa Japonica Group e_gw1.03.00.529.1 Ostreococcus tauri e_gw1.131.48.1 Physcomitrella patens subsp. patens e_gw1.66.73.1 Physcomitrella patens subsp. patens e_gw1.66.94.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1310105 Physcomitrella patens subsp. patens 28976.m000163 Ricinus communis 29562.m000029 Ricinus communis 29706.m001286 Ricinus communis 29929.m004537 Ricinus communis XP_002950394 Volvox carteri f. nagariensis XP_002957429 Volvox carteri f. nagariensis XP_002957465 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR32467 7.6E-200 175 552 No hit NA Pfam PF00847 5.4E-12 202 261 IPR001471 AP2/ERF domain SUPERFAMILY SSF54171 5.7E-17 202 271 IPR016177 DNA-binding, integrase-type ProSiteProfiles PS51032 18.9 203 269 IPR001471 AP2/ERF domain SMART SM00380 3.4E-29 203 275 IPR001471 AP2/ERF domain PRINTS PR00367 3.1E-6 204 215 IPR001471 AP2/ERF domain SUPERFAMILY SSF54171 9.8E-18 304 365 IPR016177 DNA-binding, integrase-type ProSiteProfiles PS51032 19.2 305 363 IPR001471 AP2/ERF domain SMART SM00380 3.7E-33 305 369 IPR001471 AP2/ERF domain Pfam PF00847 2.8E-12 306 355 IPR001471 AP2/ERF domain PRINTS PR00367 3.1E-6 345 365 IPR001471 AP2/ERF domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787