Basic information
Locus name	AT1G49900
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation(C2H2)
Effect for Senescence	unclear
Gene Description	zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function zinc ion binding
Sequence	AT1G49900.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G49900.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -37.5 kcal/mol  p-value: 0.000127  position: 1942  target 5' A                     U  3'             UGAUGAUGGUGAUGAGGAUGA                 ACUGCUACUACUACUUCUACU      miRNA  3'                          5'
Ortholog Group
Ortholog Groups: OG5_149596	Accession Taxon NP_175412 ( AT1G49900 ) Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11389 2.4E-26 186 820 No hit NA Pfam PF13912 1.3E-8 192 215 No hit NA SUPERFAMILY SSF57667 9.0E-8 192 267 No hit NA ProSiteProfiles PS50157 10.0 193 220 IPR007087 Zinc finger, C2H2 SMART SM00355 0.0 193 215 IPR015880 Zinc finger, C2H2-like ProSitePatterns PS00028 NA 195 215 IPR007087 Zinc finger, C2H2 Pfam PF13912 1.8E-8 244 268 No hit NA SMART SM00355 0.7 245 267 IPR015880 Zinc finger, C2H2-like ProSitePatterns PS00028 NA 247 267 IPR007087 Zinc finger, C2H2 Coils Coil NA 596 617 No hit NA SUPERFAMILY SSF57667 2.0E-6 749 820 No hit NA Pfam PF13912 1.0E-5 750 773 No hit NA ProSiteProfiles PS50157 10.3 750 777 IPR007087 Zinc finger, C2H2 SMART SM00355 0.1 750 772 IPR015880 Zinc finger, C2H2-like ProSitePatterns PS00028 NA 752 772 IPR007087 Zinc finger, C2H2 Pfam PF13912 1.4E-7 797 821 No hit NA ProSiteProfiles PS50157 9.9 798 820 IPR007087 Zinc finger, C2H2 SMART SM00355 0.3 798 820 IPR015880 Zinc finger, C2H2-like ProSitePatterns PS00028 NA 800 820 IPR007087 Zinc finger, C2H2