Basic information
Locus name	AT1G54080
Alias	UBP1A
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	unclear
Gene Description	OLIGOURIDYLATE-BINDING PROTEIN 1A (UBP1A); FUNCTIONS IN: mRNA 3'-UTR binding
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function nucleic acid binding
Sequence	AT1G54080.1 | Genomic | mRNA | CDS | Protein AT1G54080.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G54080.1  miRNA: ath-miR5021 miRNA: ath-miR5021 mfe: -29.3 kcal/mol  p-value: 0.000116  position: 1593  target 5' C                   A  3'             UUUCUUUUUCUUCUUCUUA                 AAAGAAGAAGAAGAAGAGU      miRNA  3' A                      5'  target: AT1G54080.2  miRNA: ath-miR5021 miRNA: ath-miR5021 mfe: -29.3 kcal/mol  p-value: 0.000097  position: 1418  target 5' C                   A  3'             UUUCUUUUUCUUCUUCUUA                 AAAGAAGAAGAAGAAGAGU      miRNA  3' A                      5'
Ortholog Group
Ortholog Groups: OG5_128789	Accession Taxon NP_001117301 Arabidopsis thaliana NP_175810 Arabidopsis thaliana NP_188026 Arabidopsis thaliana NP_564018 Arabidopsis thaliana NP_849806 ( AT1G54080 ) Arabidopsis thaliana NP_001060269 Oryza sativa Japonica Group NP_001062266 Oryza sativa Japonica Group NP_001068292 Oryza sativa Japonica Group e_gw1.84.182.1 Physcomitrella patens subsp. patens gw1.84.45.1 Physcomitrella patens subsp. patens 28226.m000878 Ricinus communis 29727.m000492 Ricinus communis 29739.m003726 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF81995 9.7E-5 9 56 No hit NA PANTHER PTHR24012 1.4E-152 40 347 No hit NA SUPERFAMILY SSF54928 1.8E-43 61 226 No hit NA ProSiteProfiles PS50102 14.2 63 137 IPR000504 RNA recognition motif domain SMART SM00360 1.5E-15 64 133 IPR000504 RNA recognition motif domain Pfam PF00076 9.4E-11 65 130 IPR000504 RNA recognition motif domain ProSiteProfiles PS50102 18.4 148 226 IPR000504 RNA recognition motif domain SMART SM00360 4.6E-25 149 222 IPR000504 RNA recognition motif domain Pfam PF00076 4.4E-21 150 220 IPR000504 RNA recognition motif domain SUPERFAMILY SSF54928 2.3E-20 258 352 No hit NA ProSiteProfiles PS50102 15.3 269 344 IPR000504 RNA recognition motif domain SMART SM00360 2.9E-14 270 340 IPR000504 RNA recognition motif domain Pfam PF00076 7.1E-12 271 327 IPR000504 RNA recognition motif domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787