Basic information
Locus name	AT1G54160
Alias	NF-YA5
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation(CCAAT-HAP2)
Effect for Senescence	unclear
Gene Description	NUCLEAR FACTOR Y, SUBUNIT A5 (NF-YA5); FUNCTIONS IN: transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: response to water deprivation, negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity
Sequence	AT1G54160.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G54160.1  miRNA: ath-miR169a miRNA: ath-miR169a mfe: -39.7 kcal/mol  p-value: 0.000114  position: 1283  target 5' A   G               A  3'             CGG AAGUCAUCCUUGGCU                 GCC UUCAGUAGGAACCGA      miRNA  3' A   G               C  5'  target: AT1G54160.1  miRNA: ath-miR169b miRNA: ath-miR169b mfe: -39.9 kcal/mol  p-value: 0.000072  position: 1283  target 5' A   G               A  3'             CGG AAGUCAUCCUUGGCU                 GCC UUCAGUAGGAACCGA      miRNA  3' G   G               C  5'  target: AT1G54160.1  miRNA: ath-miR169c miRNA: ath-miR169c mfe: -39.9 kcal/mol  p-value: 0.000069  position: 1283  target 5' A   G               A  3'             CGG AAGUCAUCCUUGGCU                 GCC UUCAGUAGGAACCGA      miRNA  3' G   G               C  5'  target: AT1G54160.1  miRNA: ath-miR169h miRNA: ath-miR169h mfe: -38.1 kcal/mol  p-value: 0.000163  position: 1283  target 5' A                     C  3'             CGGG AAGUCAUCCUUGGCUA                 GUCC UUCAGUAGGAACCGAU      miRNA  3'      G                   5'  target: AT1G54160.1  miRNA: ath-miR169i miRNA: ath-miR169i mfe: -38.1 kcal/mol  p-value: 0.000500  position: 1283  target 5' A                     C  3'             CGGG AAGUCAUCCUUGGCUA                 GUCC UUCAGUAGGAACCGAU      miRNA  3'      G                   5'  target: AT1G54160.1  miRNA: ath-miR169j miRNA: ath-miR169j mfe: -38.1 kcal/mol  p-value: 0.000093  position: 1283  target 5' A                     C  3'             CGGG AAGUCAUCCUUGGCUA                 GUCC UUCAGUAGGAACCGAU      miRNA  3'      G                   5'  target: AT1G54160.1  miRNA: ath-miR169k miRNA: ath-miR169k mfe: -38.1 kcal/mol  p-value: 0.000048  position: 1283  target 5' A                     C  3'             CGGG AAGUCAUCCUUGGCUA                 GUCC UUCAGUAGGAACCGAU      miRNA  3'      G                   5'  target: AT1G54160.1  miRNA: ath-miR169l miRNA: ath-miR169l mfe: -38.1 kcal/mol  p-value: 0.000075  position: 1283  target 5' A                     C  3'             CGGG AAGUCAUCCUUGGCUA                 GUCC UUCAGUAGGAACCGAU      miRNA  3'      G                   5'  target: AT1G54160.1  miRNA: ath-miR169m miRNA: ath-miR169m mfe: -38.1 kcal/mol  p-value: 0.000098  position: 1283  target 5' A                     C  3'             CGGG AAGUCAUCCUUGGCUA                 GUCC UUCAGUAGGAACCGAU      miRNA  3'      G                   5'  target: AT1G54160.1  miRNA: ath-miR169n miRNA: ath-miR169n mfe: -38.1 kcal/mol  p-value: 0.000037  position: 1283  target 5' A                     C  3'             CGGG AAGUCAUCCUUGGCUA                 GUCC UUCAGUAGGAACCGAU      miRNA  3'      G                   5'  target: AT1G54160.1  miRNA: ath-miR5658 miRNA: ath-miR5658 mfe: -35.7 kcal/mol  p-value: 0.000038  position: 174  target 5' A                    C  3'             UUCAUCAUCAUCAUCAUCAU                 AAGUAGUAGUAGUAGUAGUA      miRNA  3' A                       5'
Ortholog Group
Ortholog Groups: OG5_142871	Accession Taxon NP_001031272 Arabidopsis thaliana NP_173202 Arabidopsis thaliana NP_175818 ( AT1G54160 ) Arabidopsis thaliana NP_188018 Arabidopsis thaliana NP_565049 Arabidopsis thaliana NP_973850 Arabidopsis thaliana NP_973851 Arabidopsis thaliana NP_974134 Arabidopsis thaliana NP_001049132 Oryza sativa Japonica Group NP_001050347 Oryza sativa Japonica Group NP_001060240 Oryza sativa Japonica Group 29706.m001307 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR12632 5.7E-74 1 306 IPR001289 CCAAT-binding transcription factor, subunit B SMART SM00521 3.3E-36 175 236 IPR001289 CCAAT-binding transcription factor, subunit B ProSiteProfiles PS51152 36.7 176 236 IPR001289 CCAAT-binding transcription factor, subunit B Pfam PF02045 5.3E-30 177 233 IPR001289 CCAAT-binding transcription factor, subunit B PRINTS PR00616 4.8E-23 179 201 IPR001289 CCAAT-binding transcription factor, subunit B ProSitePatterns PS00686 NA 181 201 IPR018362 CCAAT-binding factor, conserved site PRINTS PR00616 4.8E-23 210 233 IPR001289 CCAAT-binding transcription factor, subunit B
Mutant Image
nf-ya5(SALK_006559C)exhibited normal leaf senescence.
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787