Basic information
Locus name	AT1G63650
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:bHLH
Effect for Senescence	Unclear
Gene Description	Upregulated in senescent leaves
Evidence	Molecular evidence:Real-Time PCR [Ref 1]
References	1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber B Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75
Gene Ontology	molecular function protein dimerization activity
Sequence	AT1G63650.1 | Genomic | mRNA | CDS | Protein AT1G63650.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G63650.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -23.8 kcal/mol  p-value: 0.020631  position:  1562  target 5' G   A C           G  A 3'             GAU A GAUGAUGAAGA GA              CUG U CUACUACUUCU CU   miRNA  3' A   C A           A    5'  target: AT1G63650.1  miRNA: ath-miR847 miRNA: ath-miR847 mfe: -29.6 kcal/mol  p-value: 0.005941  position:  1628  target 5' A  G   A              U 3'             CA CAA AGGAAGGGGAGUGA              GU GUU UUCUUCUCCUCACU   miRNA  3'    A   C                5'  target: AT1G63650.2  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -23.8 kcal/mol  p-value: 0.019786  position:  1484  target 5' G   A C           G  A 3'             GAU A GAUGAUGAAGA GA              CUG U CUACUACUUCU CU   miRNA  3' A   C A           A    5'  target: AT1G63650.2  miRNA: ath-miR847 miRNA: ath-miR847 mfe: -29.6 kcal/mol  p-value: 0.005677  position:  1550  target 5' A  G   A              U 3'             CA CAA AGGAAGGGGAGUGA              GU GUU UUCUUCUCCUCACU   miRNA  3'    A   C                5'
Ortholog Group
Ortholog Groups: OG5_141651	Accession Taxon NP_176552 Arabidopsis thaliana NP_680372 Arabidopsis thaliana NP_974080 ( AT1G63650 ) Arabidopsis thaliana NP_001043391 Oryza sativa Japonica Group NP_001043392 Oryza sativa Japonica Group NP_001053530 Oryza sativa Japonica Group NP_001053531 Oryza sativa Japonica Group NP_001053532 Oryza sativa Japonica Group NP_001067642 Oryza sativa Japonica Group e_gw1.167.42.1 Physcomitrella patens subsp. patens e_gw1.31.140.1 Physcomitrella patens subsp. patens e_gw1.31.270.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2660013 Physcomitrella patens subsp. patens 30174.m009029 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11514 0.0 1 595 No hit NA Pfam PF14215 4.1E-56 13 202 IPR025610 Transcription factor MYC/MYB N-terminal Coils Coil NA 59 80 No hit NA ProSiteProfiles PS50888 16.9 401 450 IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain Pfam PF00010 5.7E-12 405 451 IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain SUPERFAMILY SSF47459 3.4E-18 405 468 IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain SMART SM00353 7.7E-17 407 456 IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain Coils Coil NA 440 468 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787