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About
Basic information
Locus name
AT1G72210
Organism
Arabidopsis thaliana
Taxonomic identifier
[NCBI]
Function category
Transcription regulation:bHLH
Effect for Senescence
Unclear
Gene Description
Upregulated in senescent leaves
Evidence
Molecular evidence:Real-Time PCR [Ref 1]
References
1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber B
Transcription factors regulating leaf senescence in Arabidopsis thaliana.
Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75
Gene Ontology
molecular function
protein dimerization activity
Sequence
AT1G72210.1 |
Genomic
|
mRNA
|
CDS
|
Protein
Ortholog Group
Ortholog Groups:
OG5_150277
Accession
Taxon
NP_177366
( AT1G72210 )
Arabidopsis thaliana
NP_189056
Arabidopsis thaliana
NP_564171
Arabidopsis thaliana
NP_001049217
Oryza sativa Japonica Group
NP_001062077
Oryza sativa Japonica Group
NP_001064473
Oryza sativa Japonica Group
e_gw1.519.9.1
Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_710125
Physcomitrella patens subsp. patens
29904.m002956
Ricinus communis
29908.m006098
Ricinus communis
Cross Link
Database
Entry ID
E-value
Start
End
InterPro ID
Description
PANTHER
PTHR32088
3.2E-159
1
320
No hit
NA
SUPERFAMILY
SSF47459
3.7E-17
121
186
IPR011598
Myc-type, basic helix-loop-helix (bHLH) domain
ProSiteProfiles
PS50888
16.3
122
173
IPR011598
Myc-type, basic helix-loop-helix (bHLH) domain
Pfam
PF00010
1.1E-12
123
174
IPR011598
Myc-type, basic helix-loop-helix (bHLH) domain
SMART
SM00353
1.8E-10
128
179
IPR011598
Myc-type, basic helix-loop-helix (bHLH) domain
Coils
Coil
NA
296
317
No hit
NA
Subcellular Localization
Localization
nucleus
Evidence
SUBAcon
Pubmed ID
23180787