Basic information
Locus name	AT1G70980
Alias	SYNC3
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others( translation)
Effect for Senescence	unclear
Gene Description	SYNC3; FUNCTIONS IN: in 6 functions; INVOLVED IN: asparaginyl-tRNA aminoacylation, aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process asparaginyl-tRNA aminoacylation tRNA aminoacylation for protein translation cellular component cytoplasm molecular function ATP binding aminoacyl-tRNA ligase activity asparagine-tRNA ligase activity nucleotide binding
Pathway	KEGG map00970 (EC 6.1.1.22) Reactome REACT_71
Sequence	AT1G70980.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126756	Accession Taxon NP_177254 ( AT1G70980 ) Arabidopsis thaliana NP_193462 Arabidopsis thaliana NP_200479 Arabidopsis thaliana CMM098C Cyanidioschyzon merolae strain 10D CMR205C Cyanidioschyzon merolae strain 10D 117306 Chlamydomonas reinhardtii ACO64125 Micromonas sp. RCC299 ACO70511 Micromonas sp. RCC299 NP_001043066 Oryza sativa Japonica Group NP_001059657 Oryza sativa Japonica Group 1300010163 Ostreococcus tauri e_gw1.11.00.88.1 Ostreococcus tauri e_gw1.28.66.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_560031 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_56000029 Physcomitrella patens subsp. patens 29912.m005417 Ricinus communis estExt_fgenesh1_pm.C_chr_40019 Thalassiosira pseudonana CCMP1335 XP_002957196 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22594 1.3E-225 9 570 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like Hamap MF_00534 42.2 35 571 IPR004522 Asparagine-tRNA ligase, class IIb TIGRFAM TIGR00457 1.8E-167 35 569 IPR004522 Asparagine-tRNA ligase, class IIb SUPERFAMILY SSF50249 3.4E-11 44 132 IPR012340 Nucleic acid-binding, OB-fold Pfam PF01336 8.0E-9 50 128 IPR004365 Nucleic acid binding, OB-fold, tRNA/helicase-type SUPERFAMILY SSF55681 2.6E-92 148 211 No hit NA Pfam PF00152 2.3E-8 150 216 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) ProSiteProfiles PS51185 11.1 233 289 IPR000738 WHEP-TRS SMART SM00991 1.5E-7 237 294 IPR000738 WHEP-TRS Pfam PF00152 6.4E-59 297 564 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) SUPERFAMILY SSF55681 2.6E-92 300 566 No hit NA PRINTS PR01042 2.9E-12 308 320 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb PRINTS PR01042 2.9E-12 324 337 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb ProSiteProfiles PS50862 12.5 326 561 IPR006195 Aminoacyl-tRNA synthetase, class II PRINTS PR01042 2.9E-12 486 502 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb PRINTS PR01042 2.9E-12 526 540 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787