Basic information
Locus name	AT1G75440
Alias	UBC16
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification
Effect for Senescence	unclear
Gene Description	ubiquitin-conjugating enzyme 16 (UBC16); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function acid-amino acid ligase activity
Pathway
Sequence	AT1G75440.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128794	Accession Taxon NP_564493 Arabidopsis thaliana NP_565110 ( AT1G75440 ) Arabidopsis thaliana NP_568619 Arabidopsis thaliana CMQ038C Cyanidioschyzon merolae strain 10D 118369 Chlamydomonas reinhardtii NP_001050906 Oryza sativa Japonica Group NP_001067367 Oryza sativa Japonica Group estExt_Genewise1.C_2110009 Physcomitrella patens subsp. patens 29634.m002062 Ricinus communis 30170.m014100 Ricinus communis e_gw1.8.209.1 Thalassiosira pseudonana CCMP1335 XP_002954336 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF54495 2.9E-40 7 133 IPR016135 Ubiquitin-conjugating enzyme/RWD-like PANTHER PTHR24067 4.7E-87 12 159 No hit NA ProSiteProfiles PS50127 28.4 18 137 IPR000608 Ubiquitin-conjugating enzyme, E2 SMART SM00212 3.6E-46 18 161 No hit NA Pfam PF00179 3.1E-39 19 152 IPR000608 Ubiquitin-conjugating enzyme, E2 ProSitePatterns PS00183 NA 88 103 IPR023313 Ubiquitin-conjugating enzyme, active site