Basic information
Locus name	AT1G77680
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nucleic acid degradation
Effect for Senescence	unclear
Gene Description	ribonuclease II family protein; FUNCTIONS IN: ribonuclease activity, RNA binding
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function RNA binding ribonuclease activity
Sequence	AT1G77680.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G77680.1  miRNA: ath-miR5021 miRNA: ath-miR5021 mfe: -27.8 kcal/mol  p-value: 0.000940  position: 79  target 5' U     A              U  3'             UUUUC UCUUCUUCUUCUUA                 AAAAG AGAAGAAGAAGAGU      miRNA  3'       A                 5'
Ortholog Group
Ortholog Groups: OG5_129417	Accession Taxon NP_177891 ( AT1G77680 ) Arabidopsis thaliana CMI107C Cyanidioschyzon merolae strain 10D 147450 Chlamydomonas reinhardtii ACO63244 Micromonas sp. RCC299 NP_001048152 Oryza sativa Japonica Group estExt_gwp_gw1.C_1650097 Physcomitrella patens subsp. patens 29908.m006157 Ricinus communis gw1.4.65.1 Thalassiosira pseudonana CCMP1335 XP_002957710 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23355 0.0 106 987 No hit NA SUPERFAMILY SSF50249 5.1E-25 145 247 IPR012340 Nucleic acid-binding, OB-fold SUPERFAMILY SSF50249 5.1E-25 301 329 IPR012340 Nucleic acid-binding, OB-fold SUPERFAMILY SSF50249 3.6E-9 320 448 IPR012340 Nucleic acid-binding, OB-fold SUPERFAMILY SSF50249 8.0E-120 437 826 IPR012340 Nucleic acid-binding, OB-fold Pfam PF00773 1.2E-92 476 824 IPR001900 Ribonuclease II/R SMART SM00955 9.8E-138 476 825 IPR001900 Ribonuclease II/R ProSitePatterns PS01175 NA 792 816 IPR022966 Ribonuclease II/R, conserved site SUPERFAMILY SSF50249 8.0E-120 867 910 IPR012340 Nucleic acid-binding, OB-fold