Home
Browse
Species Table
Species Tree
Mutant
Mutant Arabidopsis Seeds
Mutant Rice Seeds
Sen-ASVs
Phenotype
Chlorophyll Degradation
Stay-green QTL
Ecotype
Public Transcriptomic
Sen-smallRNA
SAGs in Poplar
SAGs in Kalanchoe serrata
Sen-TF ChIP/DAP-Seq
SAP in Arabidopsis
SAP in Soybean
Targets of Sen-AtlncRNAs
SLAGs and Mutants
Seed-Storage Times
Search
Text Search
BLAST Search
Help
User Guide
FAQs
How to Cite
Download
Links
About
Basic information
Locus name
At5g08560
Alias
AtWDS1
Organism
Arabidopsis thaliana
Taxonomic identifier
[NCBI]
Function category
Effect for Senescence
delay
Gene Description
encoding a WD repeat protein
Evidence
Genetic evidence [Ref 1]
References
1: Fu M, Yuan C, Song A, Lu J, Wang X, Sun S.
AtWDS1 negatively regulates age-dependent and dark-induced leaf senescence in Arabidopsis
Plant Sci. 2019 Aug;285:44-54. doi: 10.1016/j.plantsci.2019.04.020. Epub 2019 Apr 29.
Gene Ontology
molecular function
protein binding
Ortholog Group
Ortholog Groups:
OG5_129140
Accession
Taxon
NP_001078546
( At5g08560 )
Arabidopsis thaliana
NP_196473
Arabidopsis thaliana
NP_199205
Arabidopsis thaliana
CMS241C
Cyanidioschyzon merolae strain 10D
ACO64831
Micromonas sp. RCC299
NP_001046605
Oryza sativa Japonica Group
NP_001064796
Oryza sativa Japonica Group
e_gw1.136.36.1
Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_123000092
Physcomitrella patens subsp. patens
29885.m000140
Ricinus communis
30131.m007289
Ricinus communis
XP_002952977
Volvox carteri f. nagariensis
Cross Link
Database
Entry ID
E-value
Start
End
InterPro ID
Description
PANTHER
PTHR22838
2.7E-171
15
571
No hit
NA
ProSiteProfiles
PS50896
9.3
64
96
IPR006594
LisH dimerisation motif
SMART
SM00667
0.0
64
96
IPR006594
LisH dimerisation motif
ProSiteProfiles
PS50897
12.0
97
154
IPR006595
CTLH, C-terminal LisH motif
SMART
SM00668
4.1E-10
97
154
IPR006595
CTLH, C-terminal LisH motif
SUPERFAMILY
SSF50978
1.2E-65
262
559
IPR017986
WD40-repeat-containing domain
SMART
SM00320
2.0E-7
263
302
IPR001680
WD40 repeat
Pfam
PF00400
8.6E-8
268
302
IPR001680
WD40 repeat
ProSiteProfiles
PS50082
13.0
270
311
IPR001680
WD40 repeat
ProSiteProfiles
PS50294
41.5
270
569
IPR017986
WD40-repeat-containing domain
PRINTS
PR00320
2.1E-5
289
303
IPR020472
G-protein beta WD-40 repeat
ProSitePatterns
PS00678
NA
289
303
IPR019775
WD40 repeat, conserved site
SMART
SM00320
1.7E-5
308
347
IPR001680
WD40 repeat
Pfam
PF00400
9.3E-5
311
347
IPR001680
WD40 repeat
ProSiteProfiles
PS50082
13.1
315
356
IPR001680
WD40 repeat
SMART
SM00320
0.7
350
389
IPR001680
WD40 repeat
PRINTS
PR00320
2.1E-5
376
390
IPR020472
G-protein beta WD-40 repeat
ProSitePatterns
PS00678
NA
376
390
IPR019775
WD40 repeat, conserved site
SMART
SM00320
0.4
391
431
IPR001680
WD40 repeat
SMART
SM00320
13.0
433
471
IPR001680
WD40 repeat
SMART
SM00320
0.6
475
517
IPR001680
WD40 repeat
SMART
SM00320
2.8E-11
520
560
IPR001680
WD40 repeat
Pfam
PF00400
3.9E-12
521
559
IPR001680
WD40 repeat
ProSiteProfiles
PS50082
14.4
527
569
IPR001680
WD40 repeat
PRINTS
PR00320
2.1E-5
547
561
IPR020472
G-protein beta WD-40 repeat