Basic information
Locus name	AT1G54330
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:NAC
Effect for Senescence	Unclear
Gene Description	Upregulated in senescent leaves
Evidence	Molecular evidence:Real-Time PCR [Ref 1]
References	1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber B Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function DNA binding
Sequence	AT1G54330.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G54330.1  miRNA: ath-miR780 miRNA: ath-miR780 mfe: -25.2 kcal/mol  p-value: 0.007738  position:  503  target 5' U      A       A      C 3'             GUGCCG GUGUUUA GAAGAA              UACGGU UAUAAGU CUUCUU   miRNA  3'        C       G        5'
Ortholog Group
Ortholog Groups: OG5_139552	Accession Taxon NP_175835 ( AT1G54330 ) Arabidopsis thaliana NP_176766 Arabidopsis thaliana NP_188400 Arabidopsis thaliana NP_196061 Arabidopsis thaliana NP_566376 Arabidopsis thaliana NP_001048559 Oryza sativa Japonica Group NP_001062518 Oryza sativa Japonica Group NP_001063877 Oryza sativa Japonica Group e_gw1.10.139.1 Physcomitrella patens subsp. patens e_gw1.44.97.1 Physcomitrella patens subsp. patens gw1.73.63.1 Physcomitrella patens subsp. patens gw1.8.110.1 Physcomitrella patens subsp. patens 28872.m000248 Ricinus communis 29770.m000336 Ricinus communis 30171.m000407 Ricinus communis 30172.m000206 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31989 3.2E-110 1 284 No hit NA SUPERFAMILY SSF101941 3.1E-63 3 153 IPR003441 No apical meristem (NAM) protein Pfam PF02365 2.9E-53 6 133 IPR003441 No apical meristem (NAM) protein ProSiteProfiles PS51005 59.7 6 153 IPR003441 No apical meristem (NAM) protein