Basic information
Locus name	AT4G14540
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:CCAAT-HAP3
Effect for Senescence	Unclear
Gene Description	Upregulated in senescent leaves
Evidence	Molecular evidence:Real-Time PCR [Ref 1]
References	1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber B Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75
Gene Ontology	biological process regulation of transcription, DNA-dependent cellular component intracellular molecular function DNA binding sequence-specific DNA binding
Sequence	AT4G14540.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G14540.1  miRNA: ath-miR408 miRNA: ath-miR408 mfe: -32.0 kcal/mol  p-value: 0.001386  position:  425  target 5' A G   A             G G 3'             G UGG GGAGGAGGCGGUG A              C GUC CCUUCUCCGUCAC U   miRNA  3'   G                 G A 5'  target: AT4G14540.1  miRNA: ath-miR773 miRNA: ath-miR773 mfe: -27.8 kcal/mol  p-value: 0.002135  position:  435  target 5' G     G U               A 3'             GAGGC G GGAGCUGGAAGUGGA              CUCUG U UUUCGACCUUCGUUU   miRNA  3'                           5'
Ortholog Group
Ortholog Groups: OG5_127594	Accession Taxon NP_001031500 Arabidopsis thaliana NP_001031510 Arabidopsis thaliana NP_001031511 Arabidopsis thaliana NP_001031512 Arabidopsis thaliana NP_030436 Arabidopsis thaliana NP_178981 Arabidopsis thaliana NP_190902 Arabidopsis thaliana NP_193190 ( AT4G14540 ) Arabidopsis thaliana NP_199575 Arabidopsis thaliana NP_850277 Arabidopsis thaliana NP_850304 Arabidopsis thaliana NP_850305 Arabidopsis thaliana NP_973617 Arabidopsis thaliana CMR350C Cyanidioschyzon merolae strain 10D 111791 Chlamydomonas reinhardtii ACO68590 Micromonas sp. RCC299 NP_001044719 Oryza sativa Japonica Group NP_001050358 Oryza sativa Japonica Group NP_001055775 Oryza sativa Japonica Group NP_001056383 Oryza sativa Japonica Group NP_001060230 Oryza sativa Japonica Group gw1.02.00.531.1 Ostreococcus tauri e_gw1.25.123.1 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_302000018 Physcomitrella patens subsp. patens gw1.25.124.1 Physcomitrella patens subsp. patens gw1.462.21.1 Physcomitrella patens subsp. patens 27699.m000212 Ricinus communis 29719.m000316 Ricinus communis 29805.m001490 Ricinus communis 29923.m000817 Ricinus communis 29966.m000228 Ricinus communis 29992.m001420 Ricinus communis gw1.20.164.1 Thalassiosira pseudonana CCMP1335 XP_002949581 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11064 7.1E-82 1 115 No hit NA SUPERFAMILY SSF47113 6.7E-42 22 126 IPR009072 Histone-fold Pfam PF00808 3.4E-28 25 89 IPR003958 Transcription factor CBF/NF-Y/archaeal histone PRINTS PR00615 5.4E-22 53 71 IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase ProSitePatterns PS00685 NA 56 72 IPR003956 Transcription factor, NFYB/HAP3, conserved site PRINTS PR00615 5.4E-22 72 90 IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase PRINTS PR00615 5.4E-22 91 109 IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787