Basic information
Locus name	AT2G32070
Alias	CCR4
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others(RNA modification)
Effect for Senescence	unclear
Gene Description	CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	cellular component nucleus molecular function nucleic acid binding
Sequence	AT2G32070.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT2G32070.1  miRNA: ath-miR5658 miRNA: ath-miR5658 mfe: -33.1 kcal/mol  p-value: 0.000086  position: 139  target 5' A                    C  3'             UUCAUCAUCAUCGUUAUCAU                 AAGUAGUAGUAGUAGUAGUA      miRNA  3' A                       5'
Ortholog Group
Ortholog Groups: OG5_127146	Accession Taxon NP_178193 Arabidopsis thaliana NP_196657 Arabidopsis thaliana NP_565735 ( AT2G32070 ) Arabidopsis thaliana NP_849915 Arabidopsis thaliana CMO135C Cyanidioschyzon merolae strain 10D 184772 Chlamydomonas reinhardtii NP_113439 Guillardia theta ACO68518 Micromonas sp. RCC299 NP_001048387 Oryza sativa Japonica Group NP_001063181 Oryza sativa Japonica Group estExt_genewise1.C_Chr_02.00010384 Ostreococcus tauri estExt_Genewise1.C_170048 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_850077 Physcomitrella patens subsp. patens 29588.m000858 Ricinus communis 29848.m004554 Ricinus communis estExt_fgenesh1_pg.C_chr_10429 Thalassiosira pseudonana CCMP1335 XP_002950174 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10797 2.0E-173 1 273 No hit NA SUPERFAMILY SSF53098 3.0E-90 12 266 IPR012337 Ribonuclease H-like domain Pfam PF04857 1.6E-69 13 245 IPR006941 Ribonuclease CAF1
Mutant Image
normal leaf senescence