Basic information
Locus name	AT2G47030
Alias	VGDH1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:pectinesterase
Effect for Senescence	unclear
Gene Description	VGDH1; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process cell wall modification cellular component cell wall molecular function enzyme inhibitor activity pectinesterase activity
Pathway	KEGG map00040 (EC 3.1.1.11) map00500 (EC 3.1.1.11) MetaCyc PWY-1081
Sequence	AT2G47030.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_164506	Accession Taxon NP_182226 ( AT2G47030 ) Arabidopsis thaliana NP_182227 Arabidopsis thaliana NP_191776 Arabidopsis thaliana 29889.m003396 Ricinus communis 30116.m000389 Ricinus communis 30116.m000390 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31707 4.6E-237 1 588 No hit NA TIGRFAM TIGR01614 8.4E-10 14 189 IPR006501 Pectinesterase inhibitor SMART SM00856 5.3E-30 36 186 IPR006501 Pectinesterase inhibitor Pfam PF04043 2.5E-19 38 186 IPR006501 Pectinesterase inhibitor SUPERFAMILY SSF101148 1.4E-19 39 190 IPR006501 Pectinesterase inhibitor SUPERFAMILY SSF51126 2.2E-98 273 586 IPR011050 Pectin lyase fold/virulence factor Pfam PF01095 3.8E-112 276 571 IPR000070 Pectinesterase, catalytic ProSitePatterns PS00503 NA 422 431 IPR018040 Pectinesterase, active site
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787