Basic information
Locus name	AT2G47020
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:translation
Effect for Senescence	unclear
Gene Description	peptide chain release factor, putative; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: mitochondrion, cytoplasm
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process translational termination cellular component cytoplasm molecular function translation release factor activity, codon specific translation release factor activity
Sequence	AT2G47020.1 | Genomic | mRNA | CDS | Protein AT2G47020.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT2G47020.1  miRNA: ath-miR408 miRNA: ath-miR408 mfe: -50.1 kcal/mol  p-value: 0.000004  position: 1488  target 5' A                     G  3'             GCCAGGGAAGAGGCAGUGCAU                 CGGUCCCUUCUCCGUCACGUA      miRNA  3'                          5'  target: AT2G47020.2  miRNA: ath-miR408 miRNA: ath-miR408 mfe: -50.1 kcal/mol  p-value: 0.000003  position: 1488  target 5' A                     G  3'             GCCAGGGAAGAGGCAGUGCAU                 CGGUCCCUUCUCCGUCACGUA      miRNA  3'                          5'
Ortholog Group
Ortholog Groups: OG5_126947	Accession Taxon NP_182225 ( AT2G47020 ) Arabidopsis thaliana NP_191850 Arabidopsis thaliana CMH024C Cyanidioschyzon merolae strain 10D CMQ300C Cyanidioschyzon merolae strain 10D 174432 Chlamydomonas reinhardtii 49544 Chlamydomonas reinhardtii ACO64391 Micromonas sp. RCC299 ACO69643 Micromonas sp. RCC299 NP_001055080 Oryza sativa Japonica Group NP_001068394 Oryza sativa Japonica Group e_gw1.06.00.277.1 Ostreococcus tauri fgenesh1_pm.C_Chr_12.0001000032 Ostreococcus tauri e_gw1.130.35.1 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_278000018 Physcomitrella patens subsp. patens 29647.m002007 Ricinus communis 30076.m004567 Ricinus communis e_gw1.3.340.1 Thalassiosira pseudonana CCMP1335 gw1.5.273.1 Thalassiosira pseudonana CCMP1335 XP_002946458 Volvox carteri f. nagariensis XP_002946846 Volvox carteri f. nagariensis XP_002952789 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11075 6.5E-94 5 252 No hit NA SUPERFAMILY SSF75620 1.8E-82 15 253 No hit NA SMART SM00937 9.4E-53 51 166 IPR005139 Peptide chain release factor Pfam PF03462 2.0E-36 53 166 IPR005139 Peptide chain release factor Pfam PF00472 3.3E-18 197 252 IPR000352 Peptide chain release factor class I/class II