Basic information
Locus name	AT2G46030
Alias	UBC6
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification:ubiquitin-protein ligase
Effect for Senescence	unclear
Gene Description	ubiquitin-conjugating enzyme 6 (UBC6); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function acid-amino acid ligase activity
Pathway
Sequence	AT2G46030.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT2G46030.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -31.0 kcal/mol  p-value: 0.000357  position: 550  target 5' A               U  C    G  3'             UGAUGAUGAUGAUGA AG AUGA                 ACUGCUACUACUACU UC UACU      miRNA  3'                            5'
Ortholog Group
Ortholog Groups: OG5_128230	Accession Taxon NP_564817 Arabidopsis thaliana NP_566062 ( AT2G46030 ) Arabidopsis thaliana NP_568589 Arabidopsis thaliana CMH227C Cyanidioschyzon merolae strain 10D 183594 Chlamydomonas reinhardtii NP_001064719 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_370098 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_1610010 Physcomitrella patens subsp. patens 29822.m003370 Ricinus communis 30147.m013985 Ricinus communis 30174.m008626 Ricinus communis 30190.m011244 Ricinus communis XP_002955388 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24067 1.4E-105 1 177 No hit NA SUPERFAMILY SSF54495 6.2E-47 3 148 IPR016135 Ubiquitin-conjugating enzyme/RWD-like SMART SM00212 7.6E-51 4 148 No hit NA Pfam PF00179 7.7E-38 12 142 IPR000608 Ubiquitin-conjugating enzyme, E2 ProSiteProfiles PS50127 33.8 26 137 IPR000608 Ubiquitin-conjugating enzyme, E2 ProSitePatterns PS00183 NA 73 89 IPR023313 Ubiquitin-conjugating enzyme, active site