Basic information
Locus name	AT4G32890
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:GATA
Effect for Senescence	Unclear
Gene Description	Upregulated in senescent leaves
Evidence	Molecular evidence:Real-Time PCR [Ref 1]
References	1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber B Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75
Gene Ontology	biological process positive regulation of transcription, DNA-dependent regulation of transcription, DNA-dependent cellular component nucleus molecular function DNA binding sequence-specific DNA binding transcription factor activity sequence-specific DNA binding zinc ion binding
Sequence	AT4G32890.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G32890.1  miRNA: ath-miR170 miRNA: ath-miR170 mfe: -26.4 kcal/mol  p-value: 0.011788  position:  221  target 5' C  A      G         A  C 3'             GA GUUGAC ACGGCUUAA CA              CU UAACUG UGCCGAGUU GU   miRNA  3'    A                A    5'  target: AT4G32890.1  miRNA: ath-miR854a miRNA: ath-miR854a mfe: -30.0 kcal/mol  p-value: 0.005690  position:  66  target 5' U   G                 C 3'             CUC UCUUCUCUAUUCUC UC              GAG AGGAGGGAUAGGAG AG   miRNA  3'     G              U    5'  target: AT4G32890.1  miRNA: ath-miR854b miRNA: ath-miR854b mfe: -30.0 kcal/mol  p-value: 0.007082  position:  66  target 5' U   G                 C 3'             CUC UCUUCUCUAUUCUC UC              GAG AGGAGGGAUAGGAG AG   miRNA  3'     G              U    5'  target: AT4G32890.1  miRNA: ath-miR854c miRNA: ath-miR854c mfe: -30.0 kcal/mol  p-value: 0.005760  position:  66  target 5' U   G                 C 3'             CUC UCUUCUCUAUUCUC UC              GAG AGGAGGGAUAGGAG AG   miRNA  3'     G              U    5'  target: AT4G32890.1  miRNA: ath-miR854d miRNA: ath-miR854d mfe: -30.0 kcal/mol  p-value: 0.005896  position:  66  target 5' U   G                 C 3'             CUC UCUUCUCUAUUCUC UC              GAG AGGAGGGAUAGGAG AG   miRNA  3'     G              U    5'  target: AT4G32890.1  miRNA: ath-miR854e miRNA: ath-miR854e mfe: -30.0 kcal/mol  p-value: 0.007205  position:  66  target 5' U   G                 C 3'             CUC UCUUCUCUAUUCUC UC              GAG AGGAGGGAUAGGAG AG   miRNA  3'     G              U    5'  target: AT4G32890.1  miRNA: ath-miR859 miRNA: ath-miR859 mfe: -26.3 kcal/mol  p-value: 0.011602  position:  724  target 5' G    C   G          A   C 3'             UUUG ACU CGCGACGGAG AGA              AAAC UGA GUGUUGUCUC UCU   miRNA  3'          A                5'
Ortholog Group
Ortholog Groups: OG5_160285	Accession Taxon NP_195015 ( AT4G32890 ) Arabidopsis thaliana NP_197955 Arabidopsis thaliana NP_001044227 Oryza sativa Japonica Group NP_001056071 Oryza sativa Japonica Group gw1.241.56.1 Physcomitrella patens subsp. patens 30146.m003524 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF016992 3.0E-175 1 289 IPR016679 Transcription factor, GATA, plant PANTHER PTHR10071 2.1E-48 164 270 No hit NA ProSiteProfiles PS50114 12.3 193 229 IPR000679 Zinc finger, GATA-type SMART SM00401 1.7E-17 193 243 IPR000679 Zinc finger, GATA-type SUPERFAMILY SSF57716 1.2E-15 195 257 No hit NA Pfam PF00320 1.1E-14 199 233 IPR000679 Zinc finger, GATA-type ProSitePatterns PS00344 NA 199 224 IPR000679 Zinc finger, GATA-type
Mutant Image
normal leaf senescence
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787