Basic information
Locus name	AT5G62940
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:DOF
Effect for Senescence	Unclear
Gene Description	Upregulated in senescent leaves
Evidence	Molecular evidence:Real-Time PCR [Ref 1]
References	1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber B Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function DNA binding zinc ion binding
Sequence	AT5G62940.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G62940.1  miRNA: ath-miR854a miRNA: ath-miR854a mfe: -29.5 kcal/mol  p-value: 0.010117  position:  1312  target 5' U              G     A 3'             UCUUUUUUCUUGUC UCAUC              AGGAGGAGGGAUAG AGUAG   miRNA  3' G              G       5'  target: AT5G62940.1  miRNA: ath-miR854b miRNA: ath-miR854b mfe: -29.5 kcal/mol  p-value: 0.011572  position:  1312  target 5' U              G     A 3'             UCUUUUUUCUUGUC UCAUC              AGGAGGAGGGAUAG AGUAG   miRNA  3' G              G       5'  target: AT5G62940.1  miRNA: ath-miR854c miRNA: ath-miR854c mfe: -29.5 kcal/mol  p-value: 0.010081  position:  1312  target 5' U              G     A 3'             UCUUUUUUCUUGUC UCAUC              AGGAGGAGGGAUAG AGUAG   miRNA  3' G              G       5'  target: AT5G62940.1  miRNA: ath-miR854d miRNA: ath-miR854d mfe: -29.5 kcal/mol  p-value: 0.010666  position:  1312  target 5' U              G     A 3'             UCUUUUUUCUUGUC UCAUC              AGGAGGAGGGAUAG AGUAG   miRNA  3' G              G       5'  target: AT5G62940.1  miRNA: ath-miR854e miRNA: ath-miR854e mfe: -29.5 kcal/mol  p-value: 0.011916  position:  1312  target 5' U              G     A 3'             UCUUUUUUCUUGUC UCAUC              AGGAGGAGGGAUAG AGUAG   miRNA  3' G              G       5'
Ortholog Group
Ortholog Groups: OG5_160244	Accession Taxon NP_190147 Arabidopsis thaliana NP_201099 ( AT5G62940 ) Arabidopsis thaliana NP_568920 Arabidopsis thaliana NP_001047876 Oryza sativa Japonica Group e_gw1.170.52.1 Physcomitrella patens subsp. patens gw1.12.257.1 Physcomitrella patens subsp. patens 30147.m013945 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31992 2.1E-43 33 362 No hit NA Pfam PF02701 1.3E-36 70 129 IPR003851 Zinc finger, Dof-type ProSiteProfiles PS50884 28.8 73 127 IPR003851 Zinc finger, Dof-type ProSitePatterns PS01361 NA 75 111 IPR003851 Zinc finger, Dof-type
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787