Basic information
Locus name	AT2G39820
Alias	eIF-6
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein biosynthesis:translation initiation factor
Effect for Senescence	unclear
Gene Description	eukaryotic translation initiation factor 6, putative / eIF-6, putative; FUNCTIONS IN: ribosome binding, translation initiation factor activity; INVOLVED IN: translational initiation, mature ribosome assembly
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process mature ribosome assembly molecular function ribosome binding
Sequence	AT2G39820.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127488	Accession Taxon NP_181512 ( AT2G39820 ) Arabidopsis thaliana NP_191121 Arabidopsis thaliana CMT351C Cyanidioschyzon merolae strain 10D 188065 Chlamydomonas reinhardtii NP_113363 Guillardia theta ACO68566 Micromonas sp. RCC299 NP_001042754 Oryza sativa Japonica Group NP_001060417 Oryza sativa Japonica Group estExt_fgenesh1_pm.C_Chr_02.00010008 Ostreococcus tauri estExt_fgenesh1_pg.C_4030024 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2220028 Physcomitrella patens subsp. patens 28592.m000280 Ricinus communis estExt_Genewise1.C_chr_130009 Thalassiosira pseudonana CCMP1335 XP_002948722 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Hamap MF_00032 117.0 1 247 IPR002769 Translation initiation factor IF6 PIRSF PIRSF006413 3.4E-134 1 228 IPR002769 Translation initiation factor IF6 SUPERFAMILY SSF55909 3.4E-79 1 226 No hit NA PANTHER PTHR10784 1.1E-149 2 247 IPR002769 Translation initiation factor IF6 SMART SM00654 1.2E-118 3 206 IPR002769 Translation initiation factor IF6 Pfam PF01912 1.3E-75 5 206 IPR002769 Translation initiation factor IF6 TIGRFAM TIGR00323 1.0E-69 9 226 IPR002769 Translation initiation factor IF6