Basic information
Locus name	AT2G39930
Alias	ISA1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism:isoamylase activity
Effect for Senescence	unclear
Gene Description	ISOAMYLASE 1 (ISA1); FUNCTIONS IN: isoamylase activity, alpha-amylase activity; INVOLVED IN: amylopectin biosynthetic process, carbohydrate metabolic process
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process carbohydrate metabolic process molecular function catalytic activity cation binding hydrolase activity, hydrolyzing O-glycosyl compounds
Sequence	AT2G39930.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_132176	Accession Taxon NP_181522 ( AT2G39930 ) Arabidopsis thaliana NP_192641 Arabidopsis thaliana CMS197C Cyanidioschyzon merolae strain 10D 132067 Chlamydomonas reinhardtii 496 Chlamydomonas reinhardtii ACO66933 Micromonas sp. RCC299 ACO67665 Micromonas sp. RCC299 NP_001062271 Oryza sativa Japonica Group NP_001063433 Oryza sativa Japonica Group 1200010031 Ostreococcus tauri e_gw1.14.00.51.1 Ostreococcus tauri estExt_gwp_gw1.C_250036 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_360162 Physcomitrella patens subsp. patens 29776.m000488 Ricinus communis 29908.m006089 Ricinus communis 45776.m000014 Ricinus communis XP_002950929 Volvox carteri f. nagariensis XP_002958500 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10357 0.0 21 780 IPR015902 Glycoside hydrolase, family 13 SUPERFAMILY SSF81296 9.5E-30 72 210 IPR014756 Immunoglobulin E-set Pfam PF02922 9.4E-16 76 170 IPR004193 Glycoside hydrolase, family 13, N-terminal SUPERFAMILY SSF51445 9.4E-125 201 415 IPR017853 Glycoside hydrolase, superfamily SMART SM00642 1.7E-9 222 656 IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic domain Pfam PF00128 7.0E-15 240 417 IPR006047 Glycosyl hydrolase, family 13, catalytic domain SUPERFAMILY SSF51445 9.4E-125 445 558 IPR017853 Glycoside hydrolase, superfamily SUPERFAMILY SSF51445 9.4E-125 587 662 IPR017853 Glycoside hydrolase, superfamily SUPERFAMILY SSF51011 1.2E-14 671 775 No hit NA
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787