Basic information
Locus name	AT5G63470
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:CCAAT-HAP5
Effect for Senescence	Unclear
Gene Description	Upregulated in senescent leaves
Evidence	Molecular evidence:Real-Time PCR [Ref 1]
References	1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber B Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75
Gene Ontology	cellular component intracellular molecular function protein heterodimerization activity sequence-specific DNA binding
Sequence	AT5G63470.1 | Genomic | mRNA | CDS | Protein AT5G63470.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G63470.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -24.9 kcal/mol  p-value: 0.005301  position:  692  target 5' A C            U    U 3'             G UGGUGGUGGUGA GAUG              C GCUACUACUACU CUAC   miRNA  3' A U            U    U 5'  target: AT5G63470.2  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -24.9 kcal/mol  p-value: 0.004964  position:  711  target 5' A C            U    U 3'             G UGGUGGUGGUGA GAUG              C GCUACUACUACU CUAC   miRNA  3' A U            U    U 5'
Ortholog Group
Ortholog Groups: OG5_128092	Accession Taxon NP_001032130 ( AT5G63470 ) Arabidopsis thaliana NP_001077726 Arabidopsis thaliana NP_176013 Arabidopsis thaliana NP_190428 Arabidopsis thaliana NP_201152 Arabidopsis thaliana CMK073C Cyanidioschyzon merolae strain 10D 117655 Chlamydomonas reinhardtii ACO70405 Micromonas sp. RCC299 NP_001046029 Oryza sativa Japonica Group NP_001058312 Oryza sativa Japonica Group NP_001062136 Oryza sativa Japonica Group NP_001063489 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_Chr_11.00010026 Ostreococcus tauri e_gw1.315.24.1 Physcomitrella patens subsp. patens e_gw1.51.131.1 Physcomitrella patens subsp. patens gw1.158.69.1 Physcomitrella patens subsp. patens gw1.159.100.1 Physcomitrella patens subsp. patens gw1.370.25.1 Physcomitrella patens subsp. patens gw1.409.22.1 Physcomitrella patens subsp. patens 30147.m014493 Ricinus communis 30169.m006305 Ricinus communis e_gw1.3.585.1 Thalassiosira pseudonana CCMP1335 XP_002946507 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10252 2.0E-88 6 235 No hit NA SUPERFAMILY SSF47113 1.4E-35 23 150 IPR009072 Histone-fold Pfam PF00808 5.6E-21 78 141 IPR003958 Transcription factor CBF/NF-Y/archaeal histone
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787