Leaf Senescence DataBase

Basic information

Locus name

AT2G42280

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Transcription regulation:bHLH

Effect for Senescence

unclear

Gene Description

basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

molecular function

protein dimerization activity

Sequence

Ortholog Group

Ortholog Groups: OG5_150265

Accession	Taxon
NP_181757 ( AT2G42280 )	Arabidopsis thaliana
NP_564583	Arabidopsis thaliana
NP_973670	Arabidopsis thaliana
NP_001062190	Oryza sativa Japonica Group
NP_001063529	Oryza sativa Japonica Group
e_gw1.83.237.1	Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_2130035	Physcomitrella patens subsp. patens
29216.m000261	Ricinus communis
30152.m002405	Ricinus communis
30169.m006403	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR31880	3.0E-145	1	359	No hit	NA
ProSiteProfiles	PS50888	14.9	285	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SUPERFAMILY	SSF47459	2.6E-15	288	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-10	291	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.9E-12	291	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Coils	Coil	NA	332	353	No hit	NA

Subcellular Localization

Localization

nucleus

Evidence

SUBAcon

Pubmed ID

23180787