Basic information
GenBank ID	AB180689
Alias	OsGS1;3
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling
Effect for Senescence	delay
Gene Description	OsGS1;3
Evidence	Molecular evidence [Ref 1, Ref 2, Ref 3, Ref 4, Ref 5, Ref 6, Ref 7, Ref 8]
References	1: Kamachi K, Yamaya T, Mae T, Ojima K A Role for Glutamine Synthetase in the Remobilization of Leaf Nitrogen during Natural Senescence in Rice Leaves. Plant Physiol. 1991 Jun;96(2):411-7 2: Tabuchi M, Sugiyama K, Ishiyama K, Inoue E, Sato T, Takahashi H, Yamaya T Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1. Plant J. 2005 Jun;42(5):641-51 3: Kamachi K, Yamaya T, Hayakawa T, Mae T, Ojima K Changes in Cytosolic Glutamine Synthetase Polypeptide and its mRNA in a Leaf Blade of Rice Plants during Natural Senescence. Plant Physiol. 1992 Apr;98(4):1323-9 4: Kamachi K, Yamaya T, Hayakawa T, Mae T, Ojima K Vascular bundle-specific localization of cytosolic glutamine synthetase in rice leaves. Plant Physiol. 1992 Aug;99(4):1481-6 5: Sakurai N, Katayama Y, Yamaya T Overlapping expression of cytosolic glutamine synthetase and phenylalanine ammonia-lyase in immature leaf blades of rice. Physiol Plant 2001 Nov;113(3):400-408 6: Ishiyama K, Inoue E, Tabuchi M, Yamaya T, Takahashi H Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots. Plant Cell Physiol. 2004 Nov;45(11):1640-7 7: Sun H, Huang QM, Su J Highly effective expression of glutamine synthetase genes GS1 and GS2 in transgenic rice plants increases nitrogen-deficiency tolerance. Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao 2005 Oct;31(5):492-8 8: Cai H, Zhou Y, Xiao J, Li X, Zhang Q, Lian X Overexpressed glutamine synthetase gene modifies nitrogen metabolism and abiotic stress responses in rice. Plant Cell Rep. 2009 Mar;28(3):527-37
Gene Ontology	biological process glutamine biosynthetic process nitrogen compound metabolic process molecular function glutamate-ammonia ligase activity
Pathway	KEGG map00250 (EC 6.3.1.2) map00330 (EC 6.3.1.2) map00910 (EC 6.3.1.2) MetaCyc PWY-3282
Sequence	AB180689.1 | mRNA | CDS | Protein
miRNA Interaction
Details	target: AB180689  miRNA: osa-miR1848 miRNA: osa-miR1848 mfe: -36.2 kcal/mol  p-value: 0.029304  position:  1110  target 5' C   U G            C   A 3'             GCG C GUGCGUGUCGGC GGG              CGU G CGCGCGCGGCCG UCC   miRNA  3' A                  C     5'  target: AB180689  miRNA: osa-miR1852 miRNA: osa-miR1852 mfe: -24.1 kcal/mol  p-value: 0.025352  position:  1316  target 5' U   C          U      G 3'             UCU GCGUUCUGGG UUCAUG              GGA CGUAAGACUU AGGUAU   miRNA  3' U                     A 5'  target: AB180689  miRNA: osa-miR1884a miRNA: osa-miR1884a mfe: -27.3 kcal/mol  p-value: 0.037405  position:  942  target 5' G                 G U   A 3'             AUGAGGAG CAAUGGCG C ACG              UACUUUUC GUUGCCGC G UGU   miRNA  3'          A        A       5'  target: AB180689  miRNA: osa-miR2098-5p miRNA: osa-miR2098-5p mfe: -34.1 kcal/mol  p-value: 0.010107  position:  788  target 5' U                A    A 3'             CGUUGGC GUCUCCGC GGGG              GUAGCCG CGGAGGUG CCCU   miRNA  3'         A               5'  target: AB180689  miRNA: osa-miR2864 miRNA: osa-miR2864 mfe: -23.3 kcal/mol  p-value: 0.032077  position:  490  target 5' A   G           C  G  U 3'             ACC GUACAAUGCAG AA GA              UGG UAUGUUACGUU UU UU   miRNA  3' A   A              G    5'
Ortholog Group
Ortholog Groups: OG5_127569	Accession Taxon NP_001031969 Arabidopsis thaliana NP_001078639 Arabidopsis thaliana NP_175280 Arabidopsis thaliana NP_176794 Arabidopsis thaliana NP_188409 Arabidopsis thaliana NP_198413 Arabidopsis thaliana NP_198576 Arabidopsis thaliana NP_568335 Arabidopsis thaliana CMI233C Cyanidioschyzon merolae strain 10D 129468 Chlamydomonas reinhardtii 133971 Chlamydomonas reinhardtii 136895 Chlamydomonas reinhardtii ACO63243 Micromonas sp. RCC299 NP_001048045 Oryza sativa Japonica Group NP_001049424 Oryza sativa Japonica Group NP_001051067 ( AB180689 ) Oryza sativa Japonica Group NP_001054133 Oryza sativa Japonica Group e_gw1.241.101.1 Physcomitrella patens subsp. patens e_gw1.40.194.1 Physcomitrella patens subsp. patens estExt_fgenesh1_kg.C_190003 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_190154 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_3450002 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3450001 Physcomitrella patens subsp. patens 29675.m000392 Ricinus communis 29726.m003921 Ricinus communis estExt_fgenesh1_kg.C_chr_220004 Thalassiosira pseudonana CCMP1335 XP_002947417 Volvox carteri f. nagariensis XP_002947554 Volvox carteri f. nagariensis XP_002956198 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR20852 7.0E-184 11 357 No hit NA SUPERFAMILY SSF54368 2.9E-20 13 104 IPR008147 Glutamine synthetase, beta-Grasp Pfam PF03951 2.2E-20 21 99 IPR008147 Glutamine synthetase, beta-Grasp ProSitePatterns PS00180 NA 57 74 IPR027302 Glutamine synthetase, N-terminal conserved site SUPERFAMILY SSF55931 8.7E-70 105 355 No hit NA Pfam PF00120 3.3E-63 106 352 IPR008146 Glutamine synthetase, catalytic domain ProSitePatterns PS00181 NA 239 255 IPR027303 Glutamine synthetase, glycine-rich site