Basic information
Locus name	AT3G06380
Alias	ATTLP9
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	TUBBY-LIKE PROTEIN 9 (ATTLP9); FUNCTIONS IN: protein binding, transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding
Sequence	AT3G06380.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G06380.1  miRNA: ath-miR4239 miRNA: ath-miR4239 mfe: -28.5 kcal/mol  p-value: 0.003398  position: 818  target 5' C                     A  3'             GGAGCA GCGAAGAU GCAGA                 CCUCGU CGCUUUUA UGUUU      miRNA  3'        A        U        5'
Ortholog Group
Ortholog Groups: OG5_128355	Accession Taxon NP_001031558 Arabidopsis thaliana NP_173899 Arabidopsis thaliana NP_177816 Arabidopsis thaliana NP_187289 ( AT3G06380 ) Arabidopsis thaliana NP_197369 Arabidopsis thaliana NP_849894 Arabidopsis thaliana NP_850481 Arabidopsis thaliana 17453 Chlamydomonas reinhardtii ACO70177 Micromonas sp. RCC299 NP_001044910 Oryza sativa Japonica Group NP_001050117 Oryza sativa Japonica Group NP_001054335 Oryza sativa Japonica Group NP_001055656 Oryza sativa Japonica Group NP_001060572 Oryza sativa Japonica Group NP_001060771 Oryza sativa Japonica Group NP_001066230 Oryza sativa Japonica Group fgenesh1_pg.C_Chr_11.0001000216 Ostreococcus tauri e_gw1.212.95.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_2220003 Physcomitrella patens subsp. patens estExt_Genewise1.C_2220006 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1520071 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_74000021 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_101000015 Physcomitrella patens subsp. patens 29647.m002026 Ricinus communis 29726.m003984 Ricinus communis 29863.m001041 Ricinus communis thaps1_ua_kg.chr_10000033 Thalassiosira pseudonana CCMP1335 XP_002958099 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR16517 2.1E-199 1 380 No hit NA SUPERFAMILY SSF81383 1.4E-6 26 78 IPR001810 F-box domain, cyclin-like Pfam PF00646 4.1E-11 31 80 IPR001810 F-box domain, cyclin-like SUPERFAMILY SSF54518 1.8E-94 83 380 IPR025659 Tubby C-terminal-like domain Pfam PF01167 1.1E-109 98 374 IPR000007 Tubby, C-terminal PRINTS PR01573 5.2E-74 149 165 IPR000007 Tubby, C-terminal PRINTS PR01573 5.2E-74 165 189 IPR000007 Tubby, C-terminal PRINTS PR01573 5.2E-74 210 237 IPR000007 Tubby, C-terminal PRINTS PR01573 5.2E-74 293 310 IPR000007 Tubby, C-terminal PRINTS PR01573 5.2E-74 311 327 IPR000007 Tubby, C-terminal ProSitePatterns PS01200 NA 311 324 IPR018066 Tubby, C-terminal, conserved site PRINTS PR01573 5.2E-74 337 356 IPR000007 Tubby, C-terminal PRINTS PR01573 5.2E-74 358 380 IPR000007 Tubby, C-terminal
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787