Basic information
Locus name	AT3G07100
Alias	Sec24
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling
Effect for Senescence	unclear
Gene Description	protein transport protein Sec24, putative; FUNCTIONS IN: protein binding, transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process ER to Golgi vesicle-mediated transport intracellular protein transport cellular component COPII vesicle coat molecular function zinc ion binding
Pathway	Reactome REACT_11123
Sequence	AT3G07100.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127297	Accession Taxon NP_187366 ( AT3G07100 ) Arabidopsis thaliana CMQ471C Cyanidioschyzon merolae strain 10D 195442 Chlamydomonas reinhardtii ACO68427 Micromonas sp. RCC299 ACO68428 Micromonas sp. RCC299 NP_001052091 Oryza sativa Japonica Group e_gw1.12.00.15.1 Ostreococcus tauri estExt_Genewise1.C_3580006 Physcomitrella patens subsp. patens estExt_Genewise1.C_5700001 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_30000205 Physcomitrella patens subsp. patens 29337.m000224 Ricinus communis estExt_thaps1_ua_kg.C_chr_140048 Thalassiosira pseudonana CCMP1335 XP_002946540 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR13803 0.0 1 1038 No hit NA SUPERFAMILY SSF81995 3.9E-68 195 354 No hit NA SUPERFAMILY SSF82919 2.8E-28 356 442 IPR006895 Zinc finger, Sec23/Sec24-type Pfam PF04810 4.8E-19 367 406 IPR006895 Zinc finger, Sec23/Sec24-type Pfam PF04811 1.1E-83 443 679 IPR006896 Sec23/Sec24, trunk domain SUPERFAMILY SSF53300 1.0E-73 443 682 No hit NA SUPERFAMILY SSF81995 3.9E-68 684 778 No hit NA Pfam PF08033 5.7E-18 685 768 IPR012990 Sec23/Sec24 beta-sandwich SUPERFAMILY SSF81811 9.2E-25 780 887 IPR006900 Sec23/Sec24, helical domain Pfam PF04815 1.5E-20 783 885 IPR006900 Sec23/Sec24, helical domain SUPERFAMILY SSF82754 1.8E-24 895 1037 No hit NA Pfam PF00626 1.2E-6 914 978 IPR007123 Gelsolin domain
Subcellular Localization
Localization	endoplasmic reticulum
Evidence	SUBAcon
Pubmed ID	23180787