Basic information
Locus name	AT3G07370
Alias	CHIP
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification:protein ubiquitination
Effect for Senescence	unclear
Gene Description	CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN (CHIP); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to salt stress, response to temperature stimulus, response to abscisic acid stimulus, protein ubiquitination; LOCATED IN: ubiquitin ligase complex
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process protein ubiquitination cellular component ubiquitin ligase complex molecular function protein binding ubiquitin-protein ligase activity
Sequence	AT3G07370.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G07370.1  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -30.3 kcal/mol  p-value: 0.001948  position: 1111  target 5' A                    G  3'             UGAAGCGGAUGAGAAAUUGA                 ACUUUGCUUGUUCUUUGACU      miRNA  3'                      A  5'
Ortholog Group
Ortholog Groups: OG5_129825	Accession Taxon NP_566305 ( AT3G07370 ) Arabidopsis thaliana 120414 Chlamydomonas reinhardtii ACO69736 Micromonas sp. RCC299 NP_001054406 Oryza sativa Japonica Group NP_001060839 Oryza sativa Japonica Group 0100010270 Ostreococcus tauri e_gw1.338.19.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2450025 Physcomitrella patens subsp. patens 29070.m000131 Ricinus communis XP_002957141 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22904 2.6E-157 8 276 No hit NA SUPERFAMILY SSF48452 3.6E-26 9 108 No hit NA Pfam PF13414 5.0E-19 10 73 No hit NA ProSiteProfiles PS50293 15.9 10 111 IPR013026 Tetratricopeptide repeat-containing domain SMART SM00028 0.1 10 43 IPR019734 Tetratricopeptide repeat SMART SM00028 5.5E-4 44 77 IPR019734 Tetratricopeptide repeat SMART SM00028 38.0 78 111 IPR019734 Tetratricopeptide repeat Pfam PF07719 0.0 79 107 IPR013105 Tetratricopeptide TPR2 Coils Coil NA 174 195 No hit NA SUPERFAMILY SSF57850 6.5E-25 193 272 No hit NA Pfam PF04564 1.2E-27 200 272 IPR003613 U box domain SMART SM00504 1.6E-27 203 266 IPR003613 U box domain