Leaf Senescence DataBase

Basic information

Locus name

AT3G07820

Alias

PGA3

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Lipid/Carbohydrate metabolism

Effect for Senescence

unclear

Gene Description

polygalacturonase 3 (PGA3) / pectinase; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	carbohydrate metabolic process
molecular function	polygalacturonase activity

Sequence

AT3G07820.1 | Genomic | mRNA | CDS | Protein

Ortholog Group

Ortholog Groups: OG5_141581

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SUPERFAMILY	SSF51126	9.7E-100	31	387	IPR011050	Pectin lyase fold/virulence factor
PANTHER	PTHR31375	8.9E-180	33	386	No hit	NA
Pfam	PF00295	2.5E-117	47	374	IPR000743	Glycoside hydrolase, family 28
SMART	SM00710	1,100.0	169	195	IPR006626	Parallel beta-helix repeat
SMART	SM00710	810.0	196	217	IPR006626	Parallel beta-helix repeat
ProSitePatterns	PS00502	NA	226	239	IPR000743	Glycoside hydrolase, family 28
SMART	SM00710	74.0	249	270	IPR006626	Parallel beta-helix repeat
SMART	SM00710	4,400.0	280	301	IPR006626	Parallel beta-helix repeat