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About
Basic information
Locus name
AT3G19290
Alias
ABF4
Organism
Arabidopsis thaliana
Taxonomic identifier
[NCBI]
Function category
Hormone response pathway:ABA
Effect for Senescence
promote
Gene Description
bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediates ABA-dependent stress responses.
Evidence
Genetic evidence [Ref 1]
References
1: Gao S, Gao J, Zhu X, Song Y, Li Z, Ren G, Zhou X, Kuai B.
ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
Mol Plant. 2016 Sep 6;9(9):1272-1285. doi: 10.1016/j.molp.2016.06.006. Epub 2016 Jun 30.
Gene Ontology
biological process
regulation of transcription, DNA-dependent
molecular function
sequence-specific DNA binding transcription factor activity
sequence-specific DNA binding
Sequence
AT3G19290.1 |
Genomic
|
mRNA
|
CDS
|
Protein
AT3G19290.2 |
Genomic
|
mRNA
|
CDS
|
Protein
miRNA Interaction
Details
target: AT3G19290.1
miRNA:
ath-miR848
miRNA:
ath-miR848
mfe: -32.2 kcal/mol
p-value: 0.002635
position: 267
target 5' U U U 3'
UGGC UAGGCAGUCC CG GUC
AUCG AUCCGUCAGG GU CAG
miRNA 3' A A U 5'
target: AT3G19290.2
miRNA:
ath-miR848
miRNA:
ath-miR848
mfe: -32.2 kcal/mol
p-value: 0.002680
position: 267
target 5' U U U 3'
UGGC UAGGCAGUCC CG GUC
AUCG AUCCGUCAGG GU CAG
miRNA 3' A A U 5'
Ortholog Group
Ortholog Groups:
OG5_144915
Accession
Taxon
NP_001154626
Arabidopsis thaliana
NP_564551
Arabidopsis thaliana
NP_566629
( AT3G19290 )
Arabidopsis thaliana
NP_849777
Arabidopsis thaliana
NP_973981
Arabidopsis thaliana
NP_001048225
Oryza sativa Japonica Group
NP_001057118
Oryza sativa Japonica Group
NP_001062018
Oryza sativa Japonica Group
NP_001063362
Oryza sativa Japonica Group
gw1.9.244.1
Physcomitrella patens subsp. patens
29801.m003176
Ricinus communis
30170.m013868
Ricinus communis
Cross Link
Database
Entry ID
E-value
Start
End
InterPro ID
Description
PANTHER
PTHR22952
9.6E-234
4
373
No hit
NA
Coils
Coil
NA
238
259
No hit
NA
ProSitePatterns
PS00036
NA
356
371
IPR004827
Basic-leucine zipper domain
Mutant Image
abf2abf3abf4 exhibited stay-green phenotypes after ABA treatment
Subcellular Localization
Localization
nucleus
Evidence
SUBAcon
Pubmed ID
23180787