Leaf Senescence DataBase

Basic information

Locus name

AT3G11960

Alias

CPSF

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Others:nucleic acid binding

Effect for Senescence

unclear

Gene Description

Cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein; FUNCTIONS IN: nucleic acid binding

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

cellular component	nucleus
molecular function	nucleic acid binding

Sequence

miRNA Interaction

Details

target: AT3G11960.1
miRNA: ath-miR156h
miRNA: ath-miR156h
mfe: -32.0 kcal/mol
p-value: 0.000937

position: 541
target 5' A   G          G      G  3'
           GUG UCUCUUUCUU CUGUCA
           CAC AGAGAAAGAA GACAGU
miRNA  3'     G                    5'

target: AT3G11960.1
miRNA: ath-miR156j
miRNA: ath-miR156j
mfe: -32.1 kcal/mol
p-value: 0.003865

position: 541
target 5' A   G          G      G  3'
           GUG UCUCUUUCUU CUGUCA
           CAC AGAGAGAGAA GACAGU
miRNA  3'     G                    5'

Ortholog Group

Ortholog Groups: OG5_170515

Accession	Taxon
NP_187802 ( AT3G11960 )	Arabidopsis thaliana
NP_850565	Arabidopsis thaliana
NP_001059140	Oryza sativa Japonica Group
estExt_gwp_gw1.C_1010073	Physcomitrella patens subsp. patens
27553.m000320	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR10644	0.0	34	1289	No hit	NA
Pfam	PF10433	3.0E-63	154	588	No hit	NA
Pfam	PF03178	8.3E-33	1010	1280	IPR004871	Cleavage/polyadenylation specificity factor, A subunit, C-terminal