Basic information
Locus name	AT3G13200
Alias	EMB2769
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:nuclear mRNA splicing
Effect for Senescence	unclear
Gene Description	EMBRYO DEFECTIVE 2769 (EMB2769); INVOLVED IN: nuclear mRNA splicing, via spliceosome
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process mRNA splicing, via spliceosome cellular component spliceosomal complex
Sequence	AT3G13200.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G13200.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -35.4 kcal/mol  p-value: 0.000061  position: 494  target 5' G                  C  C  3'             UGACGAUGAUGAUGAGGA GA                 ACUGCUACUACUACUUCU CU      miRNA  3'                    A     5'
Ortholog Group
Ortholog Groups: OG5_128660	Accession Taxon NP_566447 ( AT3G13200 ) Arabidopsis thaliana 140320 Chlamydomonas reinhardtii ACO69531 Micromonas sp. RCC299 NP_001056562 Oryza sativa Japonica Group 0200010514 Ostreococcus tauri fgenesh1_pg.scaffold_169000061 Physcomitrella patens subsp. patens 29629.m001431 Ricinus communis thaps1_ua_kg.chr_2000025 Thalassiosira pseudonana CCMP1335 XP_002947793 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Pfam PF04889 1.3E-79 1 230 IPR006973 Pre-mRNA-splicing factor Cwf15/Cwc15 PANTHER PTHR12718 1.8E-107 2 230 IPR006973 Pre-mRNA-splicing factor Cwf15/Cwc15 Coils Coil NA 49 70 No hit NA Coils Coil NA 140 176 No hit NA