Basic information
Locus name	AT3G13400
Alias	sks13
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Redox regulation:oxidoreductase
Effect for Senescence	unclear
Gene Description	SKU5 Similar 13 (sks13); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: endomembrane system
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process oxidation-reduction process molecular function copper ion binding oxidoreductase activity
Sequence	AT3G13400.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_134030	Accession Taxon NP_173603 Arabidopsis thaliana NP_173604 Arabidopsis thaliana NP_175953 Arabidopsis thaliana NP_177743 Arabidopsis thaliana NP_187947 Arabidopsis thaliana NP_187948 ( AT3G13400 ) Arabidopsis thaliana NP_193932 Arabidopsis thaliana NP_194538 Arabidopsis thaliana NP_195433 Arabidopsis thaliana NP_195555 Arabidopsis thaliana NP_564479 Arabidopsis thaliana NP_564697 Arabidopsis thaliana NP_565554 Arabidopsis thaliana NP_569041 Arabidopsis thaliana NP_001044620 Oryza sativa Japonica Group NP_001053555 Oryza sativa Japonica Group NP_001055876 Oryza sativa Japonica Group NP_001058365 Oryza sativa Japonica Group NP_001058771 Oryza sativa Japonica Group NP_001059758 Oryza sativa Japonica Group e_gw1.217.10.1 Physcomitrella patens subsp. patens 28842.m000912 Ricinus communis 28842.m000913 Ricinus communis 29676.m001645 Ricinus communis 29676.m001647 Ricinus communis 29683.m000473 Ricinus communis 29842.m003573 Ricinus communis 30010.m000660 Ricinus communis 30170.m014317 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11709 0.0 4 549 No hit NA SUPERFAMILY SSF49503 1.8E-35 20 172 IPR008972 Cupredoxin Pfam PF07732 2.4E-35 33 146 IPR011707 Multicopper oxidase, type 3 SUPERFAMILY SSF49503 2.9E-37 155 337 IPR008972 Cupredoxin Pfam PF00394 1.6E-40 159 300 IPR001117 Multicopper oxidase, type 1 SUPERFAMILY SSF49503 1.8E-34 348 532 IPR008972 Cupredoxin Pfam PF07731 2.7E-27 400 521 IPR011706 Multicopper oxidase, type 2