Basic information
Locus name	AT1G09570
Alias	PHYA
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction:Light
Effect for Senescence	delay
Gene Description	Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis
Evidence	Genetic evidence:Mutant [Ref 1]
References	1: Brouwer B, Ziolkowska A, Bagard M, Keech O, Gardestr_m P The impact of light intensity on shade-induced leaf senescence. Plant Cell Environ. 2012 Jun;35(6):1084-98
Gene Ontology	biological process detection of visible light regulation of transcription, DNA-dependent
Pathway	Reactome REACT_1046
Sequence	AT1G09570.1 | Genomic | mRNA | CDS | Protein AT1G09570.2 | Genomic | mRNA | CDS | Protein
Mutant information
Mutant name	phyA
Mutant/Transgenic	mutant
Ecotype	Col-0
Mutagenesis type	T-DNA insertion_knock out
Ortholog Group
Ortholog Groups: OG5_136555	Accession Taxon NP_001117256 Arabidopsis thaliana NP_172428 ( AT1G09570 ) Arabidopsis thaliana NP_179469 Arabidopsis thaliana NP_193360 Arabidopsis thaliana NP_193547 Arabidopsis thaliana NP_198433 Arabidopsis thaliana NP_001049910 Oryza sativa Japonica Group NP_001051096 Oryza sativa Japonica Group NP_001051296 Oryza sativa Japonica Group e_gw1.13.2.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_1640046 Physcomitrella patens subsp. patens estExt_Genewise1.C_2330008 Physcomitrella patens subsp. patens estExt_Genewise1.C_3270009 Physcomitrella patens subsp. patens estExt_Genewise1.C_470039 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_910062 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_810097 Physcomitrella patens subsp. patens 29693.m002076 Ricinus communis 29889.m003301 Ricinus communis 30128.m008997 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Pfam PF08446 4.5E-19 17 77 IPR013654 PAS fold-2 SUPERFAMILY SSF55785 4.0E-10 17 78 IPR000014 PAS domain PRINTS PR01033 5.8E-112 25 47 IPR001294 Phytochrome SUPERFAMILY SSF55781 1.3E-52 90 291 No hit NA ProSiteProfiles PS50046 63.8 110 284 IPR016132 Phytochrome chromophore attachment domain SMART SM00065 7.3E-11 110 304 IPR003018 GAF domain Pfam PF01590 2.9E-38 111 293 IPR003018 GAF domain PRINTS PR01033 5.8E-112 125 144 IPR001294 Phytochrome PRINTS PR01033 5.8E-112 210 231 IPR001294 Phytochrome ProSitePatterns PS00245 NA 210 219 IPR013516 Phytochrome chromophore binding site SUPERFAMILY SSF55781 7.7E-58 302 479 No hit NA Pfam PF00360 1.8E-71 305 482 IPR013515 Phytochrome, central region PRINTS PR01033 5.8E-112 324 344 IPR001294 Phytochrome PRINTS PR01033 5.8E-112 409 428 IPR001294 Phytochrome PRINTS PR01033 5.8E-112 442 460 IPR001294 Phytochrome PANTHER PTHR24423 4.5E-35 499 1006 No hit NA ProSiteProfiles PS50112 20.3 510 580 IPR000014 PAS domain SMART SM00091 3.5E-9 512 578 IPR000014 PAS domain Pfam PF00989 1.1E-22 513 626 IPR013767 PAS fold PRINTS PR01033 5.8E-112 513 529 IPR001294 Phytochrome SUPERFAMILY SSF55785 2.2E-16 516 623 IPR000014 PAS domain TIGRFAM TIGR00229 5.2E-12 517 632 IPR000014 PAS domain PRINTS PR01033 5.8E-112 532 547 IPR001294 Phytochrome Coils Coil NA 570 591 No hit NA PRINTS PR01033 5.8E-112 605 622 IPR001294 Phytochrome PRINTS PR01033 5.8E-112 625 645 IPR001294 Phytochrome ProSiteProfiles PS50112 13.9 640 695 IPR000014 PAS domain SMART SM00091 7.3E-4 642 711 IPR000014 PAS domain Pfam PF00989 2.0E-22 643 765 IPR013767 PAS fold SUPERFAMILY SSF55785 8.9E-11 657 763 IPR000014 PAS domain SMART SM00388 1.3E-7 787 851 IPR003661 Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain Pfam PF00512 1.8E-8 790 848 IPR003661 Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain ProSiteProfiles PS50109 36.6 794 1011 IPR005467 Signal transduction histidine kinase, core SUPERFAMILY SSF55874 1.6E-13 848 1003 IPR003594 Histidine kinase-like ATPase, ATP-binding domain Pfam PF02518 2.1E-12 899 1007 IPR003594 Histidine kinase-like ATPase, ATP-binding domain SMART SM00387 2.0E-15 899 1011 IPR003594 Histidine kinase-like ATPase, ATP-binding domain
Subcellular Localization
Localization 1 Localization nucleus Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization cytosol Evidence SUBAcon Pubmed ID 23180787