Basic information   
Locus name AT3G47500
AliasCDF3
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryTranscription regulation
Effect for Senescenceunclear
Gene DescriptionCYCLING DOF FACTOR 3 (CDF3); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase, regulation of transcription
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology
biological process
molecular function
SequenceAT3G47500.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: AT3G47500.1 
miRNA: ath-miR4239
miRNA: ath-miR4239
mfe: -31.5 kcal/mol 
p-value: 0.000984 

position: 203 
target 5' U                     U  3' 
           GGAGCG GCGGAGAUGACAAA     
           CCUCGU CGCUUUUAUUGUUU     
miRNA  3'        A                 5' 
Ortholog Group      
Ortholog Groups: OG5_150317
AccessionTaxon
NP_190334 ( AT3G47500 ) Arabidopsis thaliana
NP_568567Arabidopsis thaliana
NP_851106Arabidopsis thaliana
NP_001042660Oryza sativa Japonica Group
NP_001042735Oryza sativa Japonica Group
NP_001060673Oryza sativa Japonica Group
estExt_fgenesh1_pg.C_370003Physcomitrella patens subsp. patens
28838.m000250Ricinus communis
30072.m000930Ricinus communis
30138.m004065Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR310891.6E-1271448No hitNA
PfamPF027014.1E-37106166IPR003851Zinc finger, Dof-type
ProSiteProfilesPS5088428.6110164IPR003851Zinc finger, Dof-type
ProSitePatternsPS01361NA112148IPR003851Zinc finger, Dof-type
Subcellular Localization   
Localizationnucleus
EvidenceSUBAcon
Pubmed ID23180787