Leaf Senescence DataBase

Basic information

Locus name

AT5G11260

Alias

HY5

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Signal transduction:Light

Effect for Senescence

unclear

Gene Description

ELONGATED HYPOCOTYL 5 (HY5); FUNCTIONS IN: double-stranded DNA binding, transcription factor activity, DNA binding

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	regulation of transcription, DNA-dependent
cellular component	nucleus
molecular function	DNA binding sequence-specific DNA binding transcription factor activity

Sequence

AT5G11260.1 | Genomic | mRNA | CDS | Protein

Ortholog Group

Ortholog Groups: OG5_136801

Accession	Taxon
NP_568246 ( AT5G11260 )	Arabidopsis thaliana
NP_001046236	Oryza sativa Japonica Group
0100010379	Ostreococcus tauri
e_gw1.80.85.1	Physcomitrella patens subsp. patens
estExt_Genewise1.C_870079	Physcomitrella patens subsp. patens
29634.m002076	Ricinus communis
29848.m004650	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR13301	4.0E-35	29	158	No hit	NA
Coils	Coil	NA	85	148	No hit	NA
PRINTS	PR00041	7.2E-7	85	101	IPR001630	cAMP response element binding (CREB) protein
Pfam	PF00170	8.0E-14	86	146	IPR004827	Basic-leucine zipper domain
SMART	SM00338	1.5E-14	86	150	IPR004827	Basic-leucine zipper domain
ProSiteProfiles	PS50217	12.9	88	151	IPR004827	Basic-leucine zipper domain
SUPERFAMILY	SSF57959	9.4E-14	90	148	No hit	NA
ProSitePatterns	PS00036	NA	93	108	IPR004827	Basic-leucine zipper domain
PRINTS	PR00041	7.2E-7	103	123	IPR001630	cAMP response element binding (CREB) protein
PRINTS	PR00041	7.2E-7	123	140	IPR001630	cAMP response element binding (CREB) protein

Subcellular Localization

Localization 1
	Localization	nucleus
	Evidence	Localization with GFP-fusion protein (GFP:cDNA)
	Pubmed ID	10737809