Leaf Senescence DataBase

Basic information

Locus name

AT3G48760

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Transcription regulation

Effect for Senescence

unclear

Gene Description

zinc finger (DHHC type) family protein; FUNCTIONS IN: zinc ion binding.

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

molecular function

Pathway

KEGG

map00061 (EC 2.3.1.-)
map00253 (EC 2.3.1.-)
map00310 (EC 2.3.1.-)
map00330 (EC 2.3.1.-)
map00340 (EC 2.3.1.-)
map00350 (EC 2.3.1.-)
map00362 (EC 2.3.1.-)
map00540 (EC 2.3.1.-)
map00564 (EC 2.3.1.-)
map00565 (EC 2.3.1.-)
map00604 (EC 2.3.1.-)
map00623 (EC 2.3.1.-)
map00626 (EC 2.3.1.-)
map00627 (EC 2.3.1.-)
map00642 (EC 2.3.1.-)
map00650 (EC 2.3.1.-)
map00903 (EC 2.3.1.-)
map00904 (EC 2.3.1.-)
map00906 (EC 2.3.1.-)
map00942 (EC 2.3.1.-)
map00945 (EC 2.3.1.-)
map00950 (EC 2.3.1.-)
map00960 (EC 2.3.1.-)
map00965 (EC 2.3.1.-)

Sequence

AT3G48760.1 | Genomic | mRNA | CDS | Protein

Ortholog Group

Ortholog Groups: OG5_127158

Accession	Taxon
NP_001078687	Arabidopsis thaliana
NP_190445 ( AT3G48760 )	Arabidopsis thaliana
NP_194194	Arabidopsis thaliana
NP_198922	Arabidopsis thaliana
NP_199813	Arabidopsis thaliana
NP_850638	Arabidopsis thaliana
CMF075C	Cyanidioschyzon merolae strain 10D
132294	Chlamydomonas reinhardtii
NP_113212	Guillardia theta
ACO63514	Micromonas sp. RCC299
NP_001042744	Oryza sativa Japonica Group
NP_001044919	Oryza sativa Japonica Group
NP_001045255	Oryza sativa Japonica Group
NP_001055649	Oryza sativa Japonica Group
NP_001062355	Oryza sativa Japonica Group
NP_001062374	Oryza sativa Japonica Group
NP_001063622	Oryza sativa Japonica Group
e_gw1.17.00.71.1	Ostreococcus tauri
e_gw1.209.22.1	Physcomitrella patens subsp. patens
e_gw1.26.46.1	Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_36000003	Physcomitrella patens subsp. patens
27965.m000111	Ricinus communis
29600.m000555	Ricinus communis
29863.m001070	Ricinus communis
30045.m000482	Ricinus communis
30045.m000484	Ricinus communis
30128.m008581	Ricinus communis
30131.m007024	Ricinus communis
30147.m014443	Ricinus communis
estExt_gwp_gw1.C_chr_130181	Thalassiosira pseudonana CCMP1335
XP_002953842	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR22883	2.0E-99	24	474	No hit	NA
Pfam	PF01529	3.9E-41	101	282	IPR001594	Zinc finger, DHHC-type, palmitoyltransferase
ProSiteProfiles	PS50216	27.2	158	208	IPR001594	Zinc finger, DHHC-type, palmitoyltransferase

Subcellular Localization

Localization

plasma membrane

Evidence

SUBAcon

Pubmed ID

23180787