Leaf Senescence DataBase

Basic information

Locus name

AT4G29190

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Transcription regulation

Effect for Senescence

unclear

Gene Description

zinc finger (CCCH-type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription.

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

molecular function

Sequence

AT4G29190.1 | Genomic | mRNA | CDS | Protein

miRNA Interaction

Details


target: AT4G29190.1 miRNA: ath-miR865-5p miRNA: ath-miR865-5p mfe: -26.6 kcal/mol p-value: 0.001301 position: 261 target 5' A U C 3' UC AUUGGGUCCGGAUUCA AG UAAUCUAGGUUUAAGU miRNA 3' G U A 5'

Ortholog Group

Ortholog Groups: OG5_138490

Accession	Taxon
NP_179571	Arabidopsis thaliana
NP_180161	Arabidopsis thaliana
NP_194648 ( AT4G29190 )	Arabidopsis thaliana
182666	Chlamydomonas reinhardtii
ACO66009	Micromonas sp. RCC299
NP_001042276	Oryza sativa Japonica Group
NP_001054861	Oryza sativa Japonica Group
e_gw1.177.112.1	Physcomitrella patens subsp. patens
e_gw1.297.58.1	Physcomitrella patens subsp. patens
e_gw1.297.59.1	Physcomitrella patens subsp. patens
29983.m003151	Ricinus communis
estExt_fgenesh1_pg.C_chr_40664	Thalassiosira pseudonana CCMP1335
XP_002947407	Volvox carteri f. nagariensis
XP_002958507	Volvox carteri f. nagariensis

Cross Link