Basic information
Locus name	AT5G49665
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding zinc ion binding
Sequence	AT5G49665.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G49665.1  miRNA: ath-miR847 miRNA: ath-miR847 mfe: -30.4 kcal/mol  p-value: 0.004127  position: 775  target 5' U  G                 U  3'             GU GAGGGGAAGAGGAG GA                 UA UUCUUCUUCUCCUC CU      miRNA  3' G  G              A     5'
Ortholog Group
Ortholog Groups: OG5_160185	Accession Taxon NP_179853 Arabidopsis thaliana NP_195502 Arabidopsis thaliana NP_680410 ( AT5G49665 ) Arabidopsis thaliana NP_849514 Arabidopsis thaliana NP_001051993 Oryza sativa Japonica Group 28179.m000463 Ricinus communis 30170.m013614 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11210 0.0 1 425 No hit NA SUPERFAMILY SSF57850 3.5E-12 116 173 No hit NA Pfam PF13639 8.5E-9 121 167 IPR001841 Zinc finger, RING-type ProSiteProfiles PS50089 11.6 122 167 IPR001841 Zinc finger, RING-type SMART SM00184 7.1E-6 122 166 IPR001841 Zinc finger, RING-type SUPERFAMILY SSF53300 1.1E-14 328 447 No hit NA SMART SM00327 4.4E-8 330 498 IPR002035 von Willebrand factor, type A Pfam PF13768 2.0E-12 332 441 No hit NA ProSiteProfiles PS50234 11.5 332 476 IPR002035 von Willebrand factor, type A
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787