Basic information
Locus name	AT5G41400
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding zinc ion binding
Sequence	AT5G41400.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G41400.1  miRNA: ath-miR5658 miRNA: ath-miR5658 mfe: -30.4 kcal/mol  p-value: 0.000177  position: 205  target 5' G                  G C  3'             UUUCAUCGUCAUCGUCAU G                 AAAGUAGUAGUAGUAGUA U      miRNA  3'                    G A  5'
Ortholog Group
Ortholog Groups: OG5_210548	Accession Taxon NP_176569 Arabidopsis thaliana NP_198956 ( AT5G41400 ) Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22764 1.9E-108 1 171 No hit NA SUPERFAMILY SSF57850 1.6E-19 97 155 No hit NA Pfam PF13639 2.4E-14 104 151 IPR001841 Zinc finger, RING-type ProSiteProfiles PS50089 13.4 105 149 IPR001841 Zinc finger, RING-type SMART SM00184 9.5E-7 105 148 IPR001841 Zinc finger, RING-type