Basic information
Locus name	AT5G01960
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding zinc ion binding
Sequence	AT5G01960.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_131990	Accession Taxon NP_568096 ( AT5G01960 ) Arabidopsis thaliana 177885 Chlamydomonas reinhardtii ACO61938 Micromonas sp. RCC299 NP_001042129 Oryza sativa Japonica Group NP_001055172 Oryza sativa Japonica Group e_gw1.22.273.1 Physcomitrella patens subsp. patens 27955.m000380 Ricinus communis XP_002957405 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR15860 8.9E-136 1 426 No hit NA SUPERFAMILY SSF57850 4.9E-18 356 408 No hit NA Pfam PF13639 2.7E-12 364 404 IPR001841 Zinc finger, RING-type ProSiteProfiles PS50089 13.7 365 403 IPR001841 Zinc finger, RING-type SMART SM00184 1.6E-7 365 402 IPR001841 Zinc finger, RING-type ProSitePatterns PS00518 NA 380 389 IPR017907 Zinc finger, RING-type, conserved site