Basic information
Locus name	AT5G60580
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function zinc ion binding
Pathway	KEGG map00380 (EC 6.3.2.-)
Sequence	AT5G60580.1 | Genomic | mRNA | CDS | Protein AT5G60580.2 | Genomic | mRNA | CDS | Protein AT5G60580.3 | Genomic | mRNA | CDS | Protein AT5G60580.4 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_153189	Accession Taxon NP_001032112 ( AT5G60580 ) Arabidopsis thaliana NP_568923 Arabidopsis thaliana NP_851231 Arabidopsis thaliana NP_851232 Arabidopsis thaliana NP_001045994 Oryza sativa Japonica Group NP_001058355 Oryza sativa Japonica Group gw1.24.93.1 Physcomitrella patens subsp. patens 28076.m000419 Ricinus communis 29867.m000423 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23012 3.3E-239 44 493 No hit NA ProSiteProfiles PS51292 18.7 249 311 IPR011016 Zinc finger, RING-CH-type SUPERFAMILY SSF57850 7.1E-13 253 308 No hit NA SMART SM00744 5.7E-18 256 305 IPR011016 Zinc finger, RING-CH-type Pfam PF12906 1.6E-10 257 304 IPR011016 Zinc finger, RING-CH-type