Basic information
Locus name	AT3G57480
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45570.1); Has 2218 Blast hits to 2200 proteins in 156 species: Archae - 0; Bacteria - 2; Metazoa - 1093; Fungi - 386; Plants - 370; Viruses - 1; Other Eukaryotes - 366 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function zinc ion binding
Sequence	AT3G57480.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_129160	Accession Taxon NP_189461 Arabidopsis thaliana NP_191307 ( AT3G57480 ) Arabidopsis thaliana NP_850358 Arabidopsis thaliana 117820 Chlamydomonas reinhardtii NP_001063070 Oryza sativa Japonica Group e_gw1.83.96.1 Physcomitrella patens subsp. patens gw1.325.23.1 Physcomitrella patens subsp. patens gw1.415.9.1 Physcomitrella patens subsp. patens 29761.m000413 Ricinus communis 29822.m003405 Ricinus communis XP_002954775 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR14677 1.3E-77 1 213 No hit NA SUPERFAMILY SSF118310 2.0E-12 6 49 No hit NA ProSiteProfiles PS51039 7.6 10 59 IPR000058 Zinc finger, AN1-type Pfam PF01428 1.4E-13 13 52 IPR000058 Zinc finger, AN1-type SMART SM00154 2.7E-5 13 52 IPR000058 Zinc finger, AN1-type SUPERFAMILY SSF118310 6.3E-9 93 145 No hit NA ProSiteProfiles PS51039 8.1 98 151 IPR000058 Zinc finger, AN1-type Pfam PF01428 5.7E-10 101 144 IPR000058 Zinc finger, AN1-type SMART SM00154 0.0 101 142 IPR000058 Zinc finger, AN1-type ProSiteProfiles PS50157 8.9 220 248 IPR007087 Zinc finger, C2H2 ProSitePatterns PS00028 NA 222 243 IPR007087 Zinc finger, C2H2