Basic information
Locus name	AT4G31420
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function nucleic acid binding zinc ion binding
Sequence	AT4G31420.1 | Genomic | mRNA | CDS | Protein AT4G31420.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G31420.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -33.4 kcal/mol  p-value: 0.000284  position: 949  target 5' G                  A  U  3'             UGAUGGUGAUGAUGAAGA GA                 ACUGCUACUACUACUUCU CU      miRNA  3'                    A     5'  target: AT4G31420.2  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -33.4 kcal/mol  p-value: 0.000284  position: 946  target 5' G                  A  U  3'             UGAUGGUGAUGAUGAAGA GA                 ACUGCUACUACUACUUCU CU      miRNA  3'                    A     5'
Ortholog Group
Ortholog Groups: OG5_127615	Accession Taxon NP_180026 Arabidopsis thaliana NP_567875 Arabidopsis thaliana NP_974652 ( AT4G31420 ) Arabidopsis thaliana CMG060C Cyanidioschyzon merolae strain 10D CMT546C Cyanidioschyzon merolae strain 10D 178439 Chlamydomonas reinhardtii ACO67135 Micromonas sp. RCC299 NP_001058435 Oryza sativa Japonica Group e_gw1.269.21.1 Physcomitrella patens subsp. patens e_gw1.7.151.1 Physcomitrella patens subsp. patens 28226.m000834 Ricinus communis estExt_fgenesh1_pg.C_chr_40312 Thalassiosira pseudonana CCMP1335 XP_002955898 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR13182 7.4E-99 1 403 No hit NA SMART SM00451 0.0 1 35 IPR003604 Zinc finger, U1-type SUPERFAMILY SSF57667 2.1E-6 3 36 No hit NA SMART SM00355 19.0 4 28 IPR015880 Zinc finger, C2H2-like Pfam PF12756 0.3 6 95 No hit NA ProSitePatterns PS00028 NA 6 28 IPR007087 Zinc finger, C2H2 SMART SM00451 5.1 65 99 IPR003604 Zinc finger, U1-type SUPERFAMILY SSF57667 3.2E-5 67 98 No hit NA SMART SM00355 1.8 68 92 IPR015880 Zinc finger, C2H2-like ProSitePatterns PS00028 NA 70 92 IPR007087 Zinc finger, C2H2 SUPERFAMILY SSF57667 2.4E-9 165 278 No hit NA SMART SM00355 90.0 178 200 IPR015880 Zinc finger, C2H2-like Pfam PF12756 3.7E-27 180 283 No hit NA SMART SM00355 13.0 229 256 IPR015880 Zinc finger, C2H2-like