Basic information   
Locus name AT4G12240
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryTranscription regulation
Effect for Senescenceunclear
Gene Descriptionzinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular.
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology
molecular function
SequenceAT4G12240.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: AT4G12240.1 
miRNA: ath-miR396b
miRNA: ath-miR396b
mfe: -29.0 kcal/mol 
p-value: 0.003390 

position: 945 
target 5' G                     A  3' 
           AAGUU GAGAAAGUUGUGGGG     
           UUCAA UUCUUUCGACACCUU     
miRNA  3'       G                  5' 
Ortholog Group      
Ortholog Groups: OG5_150330
AccessionTaxon
NP_192961 ( AT4G12240 ) Arabidopsis thaliana
NP_200014Arabidopsis thaliana
NP_001056913Oryza sativa Japonica Group
gw1.10.88.1Physcomitrella patens subsp. patens
gw1.343.11.1Physcomitrella patens subsp. patens
gw1.95.24.1Physcomitrella patens subsp. patens
30170.m013842Ricinus communis
30190.m011014Ricinus communis
30190.m011015Ricinus communis
XP_002945917Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
SUPERFAMILYSSF576677.2E-5116142No hitNA
ProSiteProfilesPS5015710.9117145IPR007087Zinc finger, C2H2
ProSitePatternsPS00028NA119140IPR007087Zinc finger, C2H2
PfamPF019363.1E-8187270IPR021139NYN domain, limkain-b1-type
Subcellular Localization   
Localization 1
Localizationmitochondria
EvidenceLocalization with GFP-fusion protein (GFP:cDNA)
Pubmed ID10737809
Localization 2
Localizationmitochondrion
EvidenceSUBAcon
Pubmed ID23180787