Basic information
Locus name	AT5G41360
Alias	XBP2
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	XPB2; FUNCTIONS IN: in 7 functions; INVOLVED IN: response to UV-B, N-terminal protein myristoylation.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process nucleotide-excision repair molecular function ATP-dependent DNA helicase activity
Sequence	AT5G41360.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127208	Accession Taxon NP_568591 ( AT5G41360 ) Arabidopsis thaliana NP_568592 Arabidopsis thaliana CMH245C Cyanidioschyzon merolae strain 10D 181520 Chlamydomonas reinhardtii NP_113091 Guillardia theta ACO68966 Micromonas sp. RCC299 NP_001043936 Oryza sativa Japonica Group fgenesh1_pm.C_Chr_03.0001000079 Ostreococcus tauri estExt_fgenesh1_pg.C_1770065 Physcomitrella patens subsp. patens 30190.m011249 Ricinus communis e_gw1.4.66.1 Thalassiosira pseudonana CCMP1335 XP_002949854 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11274 0.0 1 765 No hit NA TIGRFAM TIGR00603 0.0 51 763 IPR001161 Helicase Ercc3 PRINTS PR00851 3.4E-150 64 84 IPR001161 Helicase Ercc3 Pfam PF13625 1.5E-25 65 186 No hit NA PRINTS PR00851 3.4E-150 150 169 IPR001161 Helicase Ercc3 SUPERFAMILY SSF52540 6.6E-35 235 457 IPR027417 P-loop containing nucleoside triphosphate hydrolase PRINTS PR00851 3.4E-150 263 289 IPR001161 Helicase Ercc3 SMART SM00487 1.2E-20 278 459 IPR014001 Helicase, superfamily 1/2, ATP-binding domain Pfam PF04851 1.6E-14 281 437 IPR006935 Helicase/UvrB domain ProSiteProfiles PS51192 18.7 293 455 IPR014001 Helicase, superfamily 1/2, ATP-binding domain PRINTS PR00851 3.4E-150 294 316 IPR001161 Helicase Ercc3 SUPERFAMILY SSF52540 8.8E-30 389 465 IPR027417 P-loop containing nucleoside triphosphate hydrolase PRINTS PR00851 3.4E-150 401 421 IPR001161 Helicase Ercc3 PRINTS PR00851 3.4E-150 467 489 IPR001161 Helicase Ercc3 SUPERFAMILY SSF52540 8.8E-30 499 711 IPR027417 P-loop containing nucleoside triphosphate hydrolase PRINTS PR00851 3.4E-150 505 520 IPR001161 Helicase Ercc3 ProSiteProfiles PS51194 11.9 510 676 IPR001650 Helicase, C-terminal PRINTS PR00851 3.4E-150 525 547 IPR001161 Helicase Ercc3 SMART SM00490 8.2E-10 538 616 IPR001650 Helicase, C-terminal Pfam PF00271 6.7E-12 548 616 IPR001650 Helicase, C-terminal PRINTS PR00851 3.4E-150 572 590 IPR001161 Helicase Ercc3 PRINTS PR00851 3.4E-150 591 616 IPR001161 Helicase Ercc3 PRINTS PR00851 3.4E-150 628 651 IPR001161 Helicase Ercc3 PRINTS PR00851 3.4E-150 718 737 IPR001161 Helicase Ercc3
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787