Basic information
Locus name	AT3G53120
Alias	VPS37-1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	VPS37-1; LOCATED IN: ESCRT I complex.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Sequence	AT3G53120.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G53120.1  miRNA: ath-miR447a-3p miRNA: ath-miR447a-3p mfe: -32.2 kcal/mol  p-value: 0.000604  position: 118  target 5' A      G   A             G  3'             CAACAA GGC AUCUCGUCCUCAG                 GUUGUU UUG UAGAGCAGGGGUU      miRNA  3'                             5'  target: AT3G53120.1  miRNA: ath-miR447b miRNA: ath-miR447b mfe: -32.2 kcal/mol  p-value: 0.000702  position: 118  target 5' A      G   A             G  3'             CAACAA GGC AUCUCGUCCUCAG                 GUUGUU UUG UAGAGCAGGGGUU      miRNA  3'                             5'
Ortholog Group
Ortholog Groups: OG5_131605	Accession Taxon NP_190880 ( AT3G53120 ) Arabidopsis thaliana NP_850268 Arabidopsis thaliana ACO64845 Micromonas sp. RCC299 NP_001049204 Oryza sativa Japonica Group NP_001050523 Oryza sativa Japonica Group 0700010437 Ostreococcus tauri e_gw1.424.6.1 Physcomitrella patens subsp. patens e_gw1.69.75.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_2260032 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_68000123 Physcomitrella patens subsp. patens 30078.m002231 Ricinus communis estExt_thaps1_ua_kg.C_chr_50133 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR13678 1.8E-178 1 208 No hit NA Pfam PF07200 1.7E-44 62 205 IPR009851 Modifier of rudimentary, Modr Coils Coil NA 95 116 No hit NA Coils Coil NA 126 154 No hit NA ProSiteProfiles PS51314 18.8 137 217 IPR009851 Modifier of rudimentary, Modr SUPERFAMILY SSF140111 4.9E-9 154 205 No hit NA Coils Coil NA 160 184 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787