Basic information
Locus name	AT4G05000
Alias	VPS28
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1 (VPS28-1); FUNCTIONS IN: transporter activity; INVOLVED IN: transport;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Sequence	AT4G05000.1 | Genomic | mRNA | CDS | Protein AT4G05000.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128770	Accession Taxon NP_193887 Arabidopsis thaliana NP_567281 ( AT4G05000 ) Arabidopsis thaliana NP_849417 Arabidopsis thaliana NP_974513 Arabidopsis thaliana NP_974585 Arabidopsis thaliana CMN120C Cyanidioschyzon merolae strain 10D 137924 Chlamydomonas reinhardtii ACO68456 Micromonas sp. RCC299 NP_001044441 Oryza sativa Japonica Group 0100010435 Ostreococcus tauri estExt_fgenesh1_pm.C_650010 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_340136 Physcomitrella patens subsp. patens 29917.m001967 Ricinus communis fgenesh1_pg.C_chr_12000112 Thalassiosira pseudonana CCMP1335 XP_002952776 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR12937 2.7E-104 1 210 IPR007143 Vacuolar protein sorting-associated, VPS28 PIRSF PIRSF017535 2.4E-106 1 207 IPR007143 Vacuolar protein sorting-associated, VPS28 ProSiteProfiles PS51313 30.1 1 100 IPR017898 Vacuolar protein sorting-associated, VPS28, N-terminal SUPERFAMILY SSF140111 3.6E-29 3 98 No hit NA Pfam PF03997 5.0E-79 19 205 IPR007143 Vacuolar protein sorting-associated, VPS28 ProSiteProfiles PS51310 44.8 110 206 IPR017899 Vacuolar protein sorting-associated, VPS28, C-terminal SUPERFAMILY SSF140427 5.2E-34 111 205 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787