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| Locus name | AT3G01420 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Lipid/Carbohydrate metabolism:Fatty acid a-oxidation |
| Effect for Senescence | Unclear |
| Gene Description | alpha-Dioxygenase. |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Pathway | |
| Sequence | AT3G01420.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT3G01420.1
miRNA: ath-miR397b
miRNA: ath-miR397b
mfe: -23.8 kcal/mol
p-value: 0.053676
position: 1310
target 5' A A 3'
CAUUGAUGAUGUAC CAG GA
GUAGUUGCUACGUG GUU CU
miRNA 3' A A 5'
target: AT3G01420.1
miRNA: ath-miR414
miRNA: ath-miR414
mfe: -27.2 kcal/mol
p-value: 0.004069
position: 1687
target 5' G U U G G 3'
UG ACGAUGGUGAUG GGA GA
AC UGCUACUACUAC UCU CU
miRNA 3' U A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_146328 | |
| Cross Link | |
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