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| Locus name | AT1G54100 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Lipid/Carbohydrate metabolism:fatty acid catabolism |
| Effect for Senescence | Unclear |
| Gene Description | Aldehyde dehydrogenase.Upregulated in senescent leaves. |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT1G54100.1 | Genomic | mRNA | CDS | Protein
AT1G54100.2 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT1G54100.1
miRNA: ath-miR773
miRNA: ath-miR773
mfe: -28.2 kcal/mol
p-value: 0.008119
position: 1590
target 5' U U U C 3'
GG CG GAAGCUGGAAGCGA
UC GU UUUCGACCUUCGUU
miRNA 3' C U U 5'
target: AT1G54100.2
miRNA: ath-miR2933a
miRNA: ath-miR2933a
mfe: -28.5 kcal/mol
p-value: 0.004136
position: 11
target 5' A U C G 3'
GGUGA UUUUUUCUCUGAU UUC
CCGCU AAAGGAGAGGCUA AAG
miRNA 3' U 5'
target: AT1G54100.2
miRNA: ath-miR2933b
miRNA: ath-miR2933b
mfe: -28.5 kcal/mol
p-value: 0.006561
position: 11
target 5' A U C G 3'
GGUGA UUUUUUCUCUGAU UUC
CCGCU AAAGGAGAGGCUA AAG
miRNA 3' U 5'
target: AT1G54100.2
miRNA: ath-miR773
miRNA: ath-miR773
mfe: -28.2 kcal/mol
p-value: 0.007850
position: 1539
target 5' U U U C 3'
GG CG GAAGCUGGAAGCGA
UC GU UUUCGACCUUCGUU
miRNA 3' C U U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_130350 | |
| Cross Link | |
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| Localization | cytosol |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
